Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   M2M89_RS17930 Genome accession   NZ_CP097130
Coordinates   3489680..3490402 (-) Length   240 a.a.
NCBI ID   WP_014481051.1    Uniprot ID   -
Organism   Bacillus subtilis strain S16     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3484680..3495402
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M2M89_RS17895 fliW 3484819..3485250 (-) 432 WP_003228007.1 flagellar assembly protein FliW -
  M2M89_RS17900 yviE 3485271..3485846 (-) 576 WP_041850476.1 DUF6470 family protein -
  M2M89_RS17905 flgL 3485893..3486789 (-) 897 WP_015714797.1 flagellar hook-associated protein FlgL -
  M2M89_RS17910 flgK 3486800..3488323 (-) 1524 WP_003228001.1 flagellar hook-associated protein FlgK -
  M2M89_RS17915 flgN 3488342..3488824 (-) 483 WP_014481048.1 flagellar protein FlgN -
  M2M89_RS17920 flgM 3488840..3489106 (-) 267 WP_014481049.1 flagellar biosynthesis anti-sigma factor FlgM -
  M2M89_RS17925 yvyF 3489187..3489606 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  M2M89_RS17930 comFC 3489680..3490402 (-) 723 WP_014481051.1 comF operon protein ComFC Machinery gene
  M2M89_RS17935 comFB 3490366..3490662 (-) 297 WP_003227989.1 late competence protein ComFB -
  M2M89_RS17940 comFA 3490722..3492113 (-) 1392 WP_041850475.1 ATP-dependent helicase ComFA Machinery gene
  M2M89_RS17945 fakBA 3492219..3493064 (-) 846 WP_003227986.1 DegV family protein -
  M2M89_RS17950 degU 3493162..3493851 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  M2M89_RS17955 degS 3493934..3495091 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27521.79 Da        Isoelectric Point: 9.3154

>NTDB_id=687458 M2M89_RS17930 WP_014481051.1 3489680..3490402(-) (comFC) [Bacillus subtilis strain S16]
MSNEAGGGIHKLICLLCDSQFSQDVTWRALFLLKPDEKVCYSCRSKLKKITGHICPLCGRPQSVHAVCRDCEVWRTRIRD
SLLLRQNRSVYTYNDMMKETLSRFKFRGDAEIINAFKSDFSSTFSKVYPDKHFVLVPIPLSKEREEERGFNQAQLLAECL
DRPSHHPLIRLNNEKQSKKKKTERLLSERIFDTKNNSAEGMNIILIDDLYTTGATLHFAARCLLEKGKAASVSSFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=687458 M2M89_RS17930 WP_014481051.1 3489680..3490402(-) (comFC) [Bacillus subtilis strain S16]
ATGTCAAACGAAGCAGGAGGAGGCATTCATAAACTGATCTGTTTATTATGTGATTCGCAATTTTCTCAAGATGTTACATG
GAGAGCCCTTTTTTTACTAAAGCCTGATGAAAAGGTTTGTTATTCTTGCAGAAGCAAATTAAAGAAAATCACAGGACATA
TCTGCCCCCTGTGCGGCAGACCTCAATCTGTTCATGCCGTATGCAGGGATTGCGAGGTGTGGAGAACAAGGATCAGAGAC
AGTTTGCTATTGCGTCAAAACCGTTCAGTTTACACATATAATGATATGATGAAAGAAACGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCATTTAAAAGTGATTTTTCTTCAACCTTTTCTAAGGTTTACCCCGATAAGCATTTTG
TTCTTGTACCTATTCCGCTGAGCAAGGAACGGGAAGAAGAGCGCGGATTTAACCAGGCACAGCTCTTGGCAGAATGTTTA
GACCGGCCTTCCCACCATCCCCTCATTCGCCTGAATAATGAGAAACAGTCAAAGAAAAAGAAAACAGAACGCCTGCTGTC
AGAGCGCATTTTTGATACAAAAAATAATTCAGCAGAAGGTATGAATATCATTTTAATAGACGATCTTTATACAACAGGCG
CCACCTTGCACTTCGCAGCCCGCTGCTTATTAGAAAAAGGAAAAGCCGCTTCAGTGTCATCTTTTACCTTGATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

99.167

100

0.992