Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   M3M50_RS26220 Genome accession   NZ_CP097108
Coordinates   5916928..5918274 (+) Length   448 a.a.
NCBI ID   WP_163856580.1    Uniprot ID   -
Organism   Pseudomonas bijieensis strain SP1     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5911928..5923274
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M3M50_RS26195 (M3M50_26195) pgeF 5912141..5912866 (-) 726 WP_249015562.1 peptidoglycan editing factor PgeF -
  M3M50_RS26200 (M3M50_26200) rluD 5912863..5913825 (-) 963 WP_116833478.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  M3M50_RS26205 (M3M50_26205) - 5913977..5914993 (+) 1017 WP_092204245.1 outer membrane protein assembly factor BamD -
  M3M50_RS26210 (M3M50_26210) - 5915119..5915352 (+) 234 WP_109756371.1 PP0621 family protein -
  M3M50_RS26215 (M3M50_26215) pilS 5915342..5916931 (+) 1590 WP_163856583.1 ATP-binding protein Regulator
  M3M50_RS26220 (M3M50_26220) pilR 5916928..5918274 (+) 1347 WP_163856580.1 sigma-54 dependent transcriptional regulator Regulator
  M3M50_RS26225 (M3M50_26225) - 5918449..5918814 (-) 366 WP_249015563.1 DUF6124 family protein -
  M3M50_RS26230 (M3M50_26230) thiO 5920056..5921156 (-) 1101 WP_232201614.1 glycine oxidase ThiO -
  M3M50_RS26235 (M3M50_26235) - 5921213..5921614 (-) 402 WP_134925875.1 type IV pilin protein -

Sequence

Protein


Download         Length: 448 a.a.        Molecular weight: 50158.55 Da        Isoelectric Point: 5.9858

>NTDB_id=687115 M3M50_RS26220 WP_163856580.1 5916928..5918274(+) (pilR) [Pseudomonas bijieensis strain SP1]
MNIRSRQRILIVDDEPDIRELLDITLGRMKLDTRSAKNLAEAQSLLAGDTFDLCLTDMRLPDGTGLELVQHIQQRYPQLP
VAMITAYGSLETAIDALKAGAFDFLTKPVDLGRLRELVSSALRLPPVALPASTIERCLLGDSPPMRNVRKQIEKLARSQA
PVYISGESGCGKELVARLIHEQGPRSNQGFVPVNCGAIPTELMESEFFGHRKGSFSGAIEDKPGLFQAAHGGTLFLDEVA
DLPLAMQVKLLRAIQEKAVRAVGGQQEEVVDVRILCATHKDLDAEVAAGRFRQDLYYRLNVIELRVPPLRERREDIEPLA
NHMLQRLAANTGSPPAKLHPQALDALRNYRFPGNVRELENMLERAYTLCEQQQIEADDLRLAEGNSTTEAGNPDLMQVDN
LEDYLEDVERKLILQALEQTRWNRTAAAQRLKLSFRSMRYRLKKLGLD

Nucleotide


Download         Length: 1347 bp        

>NTDB_id=687115 M3M50_RS26220 WP_163856580.1 5916928..5918274(+) (pilR) [Pseudomonas bijieensis strain SP1]
TTGAATATTCGCTCACGGCAACGAATCCTGATCGTCGACGACGAACCGGACATCCGCGAACTCCTGGACATTACCCTGGG
CCGGATGAAACTCGACACCCGCAGCGCCAAGAACCTGGCCGAGGCCCAAAGCCTGCTGGCGGGGGATACCTTCGACCTGT
GCCTGACCGACATGCGCCTGCCCGATGGCACCGGCCTGGAACTGGTGCAGCACATCCAGCAGCGCTACCCGCAGCTGCCC
GTGGCGATGATCACTGCCTACGGCAGCCTGGAAACCGCCATCGACGCCCTCAAGGCCGGCGCCTTCGACTTCCTGACCAA
GCCGGTCGACCTGGGTCGGTTGCGGGAGCTGGTCAGCAGCGCCCTGCGCCTGCCGCCGGTCGCTCTTCCGGCAAGCACTA
TCGAGCGTTGCCTGCTGGGTGACTCCCCGCCGATGCGCAATGTGCGCAAACAGATCGAAAAACTCGCTCGCAGCCAGGCA
CCGGTGTACATCAGCGGGGAATCGGGCTGCGGCAAGGAACTGGTCGCCCGGCTGATCCACGAACAGGGGCCCCGTTCCAA
CCAGGGTTTTGTGCCAGTCAACTGTGGAGCGATTCCCACTGAGCTGATGGAAAGCGAGTTTTTTGGCCATCGAAAAGGCA
GCTTCAGCGGCGCCATCGAAGACAAGCCCGGGCTGTTCCAGGCCGCCCATGGCGGGACCTTGTTCCTCGATGAAGTGGCC
GACCTGCCCCTGGCGATGCAGGTCAAGCTACTGCGCGCCATCCAGGAAAAGGCCGTGCGCGCTGTTGGCGGCCAACAGGA
AGAAGTGGTGGACGTGCGAATTCTCTGCGCCACCCACAAGGACCTGGATGCCGAAGTCGCCGCCGGGCGCTTTCGCCAGG
ATTTGTATTACCGGCTAAATGTCATCGAACTGCGCGTCCCGCCCTTGCGCGAACGTCGCGAAGACATCGAACCGCTGGCC
AATCACATGCTCCAGCGTCTGGCGGCCAACACCGGTAGTCCACCGGCCAAGTTGCATCCCCAGGCGTTGGACGCTCTCAG
GAATTACCGCTTCCCGGGCAACGTGCGGGAACTGGAGAACATGCTTGAACGTGCCTACACCCTTTGCGAACAGCAACAAA
TCGAAGCCGACGACCTGCGCCTGGCCGAGGGTAATAGTACTACTGAGGCGGGCAATCCCGATTTGATGCAGGTCGACAAC
CTGGAGGATTACCTGGAAGACGTCGAGCGCAAGCTCATCCTCCAGGCCCTGGAGCAAACCCGCTGGAACCGCACGGCGGC
GGCGCAGCGGTTGAAGTTGTCGTTTCGGTCGATGCGGTATCGGTTAAAGAAGTTGGGGTTGGATTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(405-445)

Sigma-54 interaction domain (Sigma54_activat)

(139-304)

Response regulator receiver domain (Response_reg)

(9-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

78.378

99.107

0.777
  pilR Acinetobacter baumannii strain A118

49.455

100

0.507