Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   M3M50_RS26215 Genome accession   NZ_CP097108
Coordinates   5915342..5916931 (+) Length   529 a.a.
NCBI ID   WP_163856583.1    Uniprot ID   -
Organism   Pseudomonas bijieensis strain SP1     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5910342..5921931
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M3M50_RS26195 (M3M50_26195) pgeF 5912141..5912866 (-) 726 WP_249015562.1 peptidoglycan editing factor PgeF -
  M3M50_RS26200 (M3M50_26200) rluD 5912863..5913825 (-) 963 WP_116833478.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  M3M50_RS26205 (M3M50_26205) - 5913977..5914993 (+) 1017 WP_092204245.1 outer membrane protein assembly factor BamD -
  M3M50_RS26210 (M3M50_26210) - 5915119..5915352 (+) 234 WP_109756371.1 PP0621 family protein -
  M3M50_RS26215 (M3M50_26215) pilS 5915342..5916931 (+) 1590 WP_163856583.1 ATP-binding protein Regulator
  M3M50_RS26220 (M3M50_26220) pilR 5916928..5918274 (+) 1347 WP_163856580.1 sigma-54 dependent transcriptional regulator Regulator
  M3M50_RS26225 (M3M50_26225) - 5918449..5918814 (-) 366 WP_249015563.1 DUF6124 family protein -
  M3M50_RS26230 (M3M50_26230) thiO 5920056..5921156 (-) 1101 WP_232201614.1 glycine oxidase ThiO -
  M3M50_RS26235 (M3M50_26235) - 5921213..5921614 (-) 402 WP_134925875.1 type IV pilin protein -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58909.66 Da        Isoelectric Point: 7.0460

>NTDB_id=687114 M3M50_RS26215 WP_163856583.1 5915342..5916931(+) (pilS) [Pseudomonas bijieensis strain SP1]
MSAETSSPREKQTQRLLRLYHLYRLSIGITLVLLISSKLDNRLLEFANDDLLRSGSWLYLVLNILLVVFLENTRRPARLF
GLALTDVLLLSWLFFAAGGVPSAIGNLLIVSVAIGNTLLRGRVGLLIAAVATIGIVGSTFFLGLSDSNRPSSYLQAGTLG
ALCFAAALLVQGLTRRLEASETLAEQRASEVIGLEALNALILQRMRTGILVLDRERRVQLANESALNLLGMHDLVGQRID
DYSVALVERLQLWLNNPSLRAQSLTISGTGLALQPSFIALGHNEQHQILVFLEDLAQVAQQAQQLKLASLGRLTAGIAHE
IRNPLGAISHAAQLLRESEELNDADRRLTQIIQDHSQRMNRVIENVLQLSRRQQTTPQRLDLRTWLEQFVRQAHESMAEH
QQLHLSIDPGDYTTLMDPDQLTQVLDNLLRNAWRHSAMAHEQAEVWLKLFIDPHSQLSTLDIIDNGPGVTPEQQAHLFEP
FFTTSSQGTGLGLYLSRELCESNQARLDFKPRQGGGCFRITFAHGRKQI

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=687114 M3M50_RS26215 WP_163856583.1 5915342..5916931(+) (pilS) [Pseudomonas bijieensis strain SP1]
GTGAGCGCTGAGACCTCAAGCCCGCGCGAAAAACAGACGCAGCGTCTGCTGCGTCTCTATCACCTGTACCGCCTGAGCAT
CGGCATCACCCTGGTGCTACTGATCTCCAGCAAACTGGACAATCGCCTGCTGGAGTTCGCCAACGACGACCTGCTGCGCA
GCGGCAGCTGGTTGTATCTGGTGCTGAACATCCTGCTTGTAGTGTTCCTTGAAAACACTCGCCGCCCTGCCCGGCTGTTC
GGCCTGGCCCTCACCGACGTACTGCTGCTTTCGTGGCTGTTCTTCGCCGCAGGCGGTGTGCCCAGCGCCATCGGCAACCT
GCTCATCGTCTCGGTAGCCATCGGCAATACGCTATTGCGAGGCCGAGTCGGCCTGTTGATCGCCGCCGTCGCCACGATCG
GTATCGTCGGCTCGACTTTCTTCCTCGGCCTGAGCGACTCGAACCGCCCCAGCAGCTACCTGCAAGCCGGGACCCTGGGG
GCACTGTGCTTCGCCGCCGCCCTGCTGGTACAAGGCCTGACCCGACGGCTGGAAGCCAGCGAAACCCTGGCTGAGCAACG
GGCCAGCGAAGTGATCGGCCTCGAAGCACTCAACGCGCTGATCCTGCAACGCATGCGCACCGGCATCCTGGTGCTGGACC
GCGAACGTCGGGTACAACTGGCCAACGAAAGCGCCTTGAACCTGCTGGGCATGCACGACCTGGTCGGCCAGCGGATCGAT
GACTACTCCGTCGCCCTGGTCGAACGTCTGCAACTGTGGCTGAACAACCCTAGCCTGCGCGCACAGAGCCTGACCATCAG
CGGCACGGGCCTGGCACTGCAACCGAGCTTCATCGCCCTGGGCCACAACGAGCAACATCAGATCCTGGTCTTCCTCGAAG
ACCTGGCCCAGGTTGCGCAGCAGGCCCAACAACTCAAGCTAGCCTCCCTCGGACGCCTGACGGCCGGCATCGCCCACGAA
ATCCGCAACCCCCTGGGCGCCATCAGCCACGCGGCGCAATTGCTGCGCGAATCCGAGGAACTGAACGACGCGGATCGGCG
TCTGACGCAGATTATTCAAGATCACTCTCAACGAATGAATCGCGTCATTGAAAACGTCCTGCAACTGTCTCGCCGCCAGC
AAACCACACCCCAACGCCTCGATCTGCGGACCTGGCTCGAACAGTTCGTCCGACAGGCCCACGAAAGCATGGCCGAGCAC
CAGCAATTGCACCTGAGCATCGATCCGGGCGACTACACCACGCTGATGGACCCCGACCAGTTGACCCAGGTACTCGACAA
CCTGCTGCGCAACGCCTGGCGCCACAGCGCAATGGCCCACGAACAGGCCGAGGTCTGGCTGAAACTGTTCATCGACCCCC
ACAGCCAGCTGTCCACACTGGACATCATCGACAACGGCCCCGGCGTGACTCCAGAACAGCAAGCGCACTTGTTCGAGCCC
TTCTTTACCACCAGTAGCCAGGGCACCGGCCTTGGGCTCTATCTGTCCCGTGAGCTGTGCGAAAGCAACCAGGCCCGCCT
AGACTTCAAACCACGCCAAGGCGGCGGCTGCTTTCGCATCACCTTTGCTCACGGACGGAAACAGATTTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(309-374)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

59.659

99.811

0.595