Detailed information NTG0687109

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: M3M50_RS22140
• Genome accession: NZ_CP097108
• Coordinates: 5047134..5049380 (-)
• Length: 748 a.a.
• NCBI ID: WP_249015406.1
• Uniprot ID: -
• Organism: Pseudomonas bijieensis strain SP1
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5042134..5054380

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
M3M50_RS22105 (M3M50_22105)	murB	5042519..5043538 (-)	1020	WP_249015405.1	UDP-N-acetylmuramate dehydrogenase	-
M3M50_RS22110 (M3M50_22110)	-	5043535..5043999 (-)	465	WP_109754397.1	low molecular weight protein-tyrosine-phosphatase	-
M3M50_RS22115 (M3M50_22115)	kdsB	5043999..5044763 (-)	765	WP_109754398.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
M3M50_RS22120 (M3M50_22120)	-	5044760..5044945 (-)	186	WP_003179363.1	Trm112 family protein	-
M3M50_RS22125 (M3M50_22125)	lpxK	5044968..5045978 (-)	1011	WP_212801280.1	tetraacyldisaccharide 4'-kinase	-
M3M50_RS22130 (M3M50_22130)	-	5045978..5046406 (-)	429	WP_013694002.1	biopolymer transporter ExbD	-
M3M50_RS22135 (M3M50_22135)	exbB	5046403..5047038 (-)	636	WP_162893858.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
M3M50_RS22140 (M3M50_22140)	comA	5047134..5049380 (-)	2247	WP_249015406.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
M3M50_RS22145 (M3M50_22145)	-	5049525..5050040 (+)	516	WP_046063671.1	DUF2062 domain-containing protein	-
M3M50_RS22150 (M3M50_22150)	-	5050185..5050964 (-)	780	WP_072347169.1	ABC transporter permease	-
M3M50_RS22155 (M3M50_22155)	-	5050967..5051899 (-)	933	WP_176689314.1	ABC transporter ATP-binding protein	-
M3M50_RS22160 (M3M50_22160)	-	5052036..5052659 (-)	624	WP_249015407.1	glutathione S-transferase	-
M3M50_RS22165 (M3M50_22165)	-	5052704..5053363 (-)	660	WP_249015408.1	transglutaminase family protein	-

Sequence

Protein

• Length: 748 a.a.
• Molecular weight: 81091.17 Da
• Isoelectric Point: 9.9301

>NTDB_id=687109 M3M50_RS22140 WP_249015406.1 5047134..5049380(-) (comA) [Pseudomonas bijieensis strain SP1]
MRTGLVALALGLLAPIFLPALPPLWLIAAMPVVALMALPFRTYPLGFFLFGLAWACLSAQFALDDRLSVALDGETRWVEG
RVVGLPQQGDGVVRFELADAHSRRTRLPTTLRLAWFGGPPVNSGERWRLAVKLKRPAGLLNPHGFDYSAWLLSRGIGATG
TVKDGRLLQAARGAWRDEVRQALAQVDAHGRSGALAALVLGDGGGLTREDWQVLQDTGTVHLLVISGQHIGLLAGLVYLL
VSGAARYGLWPAGLAWLPWACALAFCAALGYGLLAGFEVPVRRACTMIGLVLLWRLRFKQPDPWWAWLLAFAGVLVFDPL
ANLRPGFWLSFAAVAILMFTFGGRLGPWRWWQTWTRAQWLVAVGLCPLLLIVGLPVSLSGPLVNLLAVPWISLLVLPSAL
LGTALLPVPLIGEGLLWIAGGLLDLLFKGLTLVAGRMPAWVPAAVPNWALGIAVLGAFLLLLPKGVPLRVLGWPMVLLMV
FPPREHLPPGQAEIWQLDVGQGLAVLVRTRRHTLLYDAGPRFGEADVGERVVLPTLRKLGVRGLDLMLLSHADADHAGGA
PAVRNGLPTREVISGDPDALPAELLAGPCDSGRRWEWDGVGFELWRWASAVESNQKSCVLLVEAGGERLLLTGDIDIHAE
RALLDEALALPIQWLAAPHHGSRSSSSMALLSRLKPHSVLISRGQGNAFGHPHPQVMARYRRSGLAIYDSAEQGAIRLQL
GAFELPRTEAGHRRYWRDRPTVGPPGQY

Nucleotide

• Length: 2247 bp

>NTDB_id=687109 M3M50_RS22140 WP_249015406.1 5047134..5049380(-) (comA) [Pseudomonas bijieensis strain SP1]
ATGCGCACAGGGTTAGTCGCGCTTGCACTGGGGCTGTTGGCCCCGATTTTTTTACCGGCACTGCCACCGTTGTGGCTGAT
TGCAGCCATGCCGGTAGTGGCATTGATGGCGTTGCCGTTTCGAACCTATCCGCTGGGTTTCTTCCTGTTCGGGCTGGCCT
GGGCCTGTCTGTCGGCGCAGTTTGCGCTGGACGATCGGTTATCCGTCGCGCTCGATGGAGAAACCCGTTGGGTCGAGGGG
CGCGTCGTCGGTTTGCCGCAACAGGGCGATGGCGTGGTGCGTTTCGAACTGGCTGATGCCCATTCACGTCGTACCCGGCT
ACCGACGACACTGCGTCTCGCGTGGTTCGGTGGCCCGCCGGTCAACAGCGGCGAGCGCTGGCGATTGGCGGTGAAACTCA
AGCGACCCGCCGGGTTGCTGAACCCACACGGCTTCGATTATTCAGCCTGGTTGTTGAGTCGCGGTATCGGCGCGACCGGT
ACGGTCAAGGACGGCCGTCTTTTGCAGGCGGCCCGGGGCGCCTGGCGGGATGAGGTGCGCCAGGCGCTGGCACAGGTCGA
CGCCCACGGCCGCTCCGGTGCGCTGGCAGCGCTGGTTCTGGGCGACGGCGGCGGGCTGACTCGCGAAGATTGGCAGGTGC
TGCAAGACACCGGCACCGTCCACTTGCTGGTGATCTCCGGGCAACACATCGGCCTGCTTGCCGGCCTGGTGTACCTGTTG
GTATCTGGCGCGGCGCGCTATGGCCTGTGGCCGGCAGGTCTGGCGTGGTTGCCTTGGGCCTGCGCGCTGGCCTTCTGCGC
CGCCCTGGGCTACGGCTTGCTCGCCGGGTTCGAGGTACCGGTGCGGCGGGCCTGCACGATGATCGGCCTGGTGCTGTTGT
GGCGCTTGCGCTTCAAGCAGCCAGATCCGTGGTGGGCATGGCTGCTGGCCTTCGCCGGAGTGCTGGTGTTCGACCCGCTG
GCCAACCTGCGGCCAGGGTTCTGGTTATCGTTTGCGGCTGTCGCCATCTTGATGTTCACCTTTGGCGGTCGCCTGGGACC
CTGGCGCTGGTGGCAAACCTGGACCCGTGCCCAGTGGCTCGTCGCGGTCGGCCTGTGTCCGTTGTTGTTGATCGTGGGGT
TGCCGGTCAGTCTCAGCGGGCCGCTGGTGAACCTGCTCGCGGTGCCCTGGATCAGCCTGTTGGTCTTGCCGTCGGCGCTG
CTCGGCACGGCGTTGTTGCCGGTCCCTCTCATTGGCGAAGGACTGCTGTGGATCGCCGGCGGACTGCTCGATCTGCTGTT
CAAGGGGCTGACGCTGGTCGCCGGACGAATGCCGGCCTGGGTCCCGGCCGCAGTCCCGAACTGGGCCCTGGGTATCGCCG
TTCTCGGCGCTTTTCTGCTGCTGTTGCCCAAAGGTGTGCCGCTACGTGTACTGGGGTGGCCAATGGTGTTGCTGATGGTT
TTTCCACCGCGAGAACACCTGCCGCCAGGGCAAGCCGAGATCTGGCAACTGGATGTGGGCCAAGGGCTGGCGGTGCTGGT
GCGGACCCGACGGCACACCCTGCTATACGACGCCGGGCCGCGTTTTGGCGAGGCAGATGTGGGCGAGCGGGTCGTCCTGC
CGACCTTGCGCAAACTGGGGGTTCGAGGCTTGGACCTGATGCTGCTCAGCCATGCCGACGCCGATCATGCCGGTGGTGCC
CCGGCCGTACGCAACGGGCTGCCGACGAGGGAAGTGATCAGCGGCGATCCCGATGCGCTGCCCGCCGAGTTGCTGGCCGG
GCCCTGCGACAGTGGCCGACGCTGGGAATGGGACGGAGTCGGGTTCGAGCTGTGGCGATGGGCCTCTGCCGTCGAAAGCA
ACCAGAAATCCTGTGTCTTGCTGGTGGAGGCCGGCGGTGAACGCTTGCTGCTGACCGGCGATATCGACATCCATGCCGAA
CGCGCCTTGCTCGACGAGGCCCTGGCACTACCGATCCAGTGGCTGGCCGCGCCTCACCATGGCAGCCGCAGTTCGTCGTC
GATGGCGCTGCTGTCACGTCTCAAGCCGCATTCGGTGTTGATTTCCCGAGGGCAGGGCAACGCGTTCGGCCATCCCCATC
CGCAGGTGATGGCCCGCTATCGACGCTCGGGCCTGGCGATCTACGACAGCGCCGAGCAGGGCGCCATTCGTCTGCAACTG
GGGGCTTTCGAGCTGCCGCGCACAGAGGCCGGACACCGACGTTACTGGCGCGATCGGCCAACAGTCGGGCCACCGGGGCA
ATATTGA

Domains

Predicted by InterproScan.

• Competence protein (Competence) (198-464)

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-676)

• Domain of unknown function (DUF4131) (DUF4131) (22-166)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	60.53	95.856	0.58
comA	Ralstonia pseudosolanacearum GMI1000	32.586	100	0.369