Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   M3M50_RS22135 Genome accession   NZ_CP097108
Coordinates   5046403..5047038 (-) Length   211 a.a.
NCBI ID   WP_162893858.1    Uniprot ID   -
Organism   Pseudomonas bijieensis strain SP1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5041403..5052038
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M3M50_RS22100 (M3M50_22100) - 5041782..5042252 (-) 471 WP_109754395.1 (2Fe-2S)-binding protein -
  M3M50_RS22105 (M3M50_22105) murB 5042519..5043538 (-) 1020 WP_249015405.1 UDP-N-acetylmuramate dehydrogenase -
  M3M50_RS22110 (M3M50_22110) - 5043535..5043999 (-) 465 WP_109754397.1 low molecular weight protein-tyrosine-phosphatase -
  M3M50_RS22115 (M3M50_22115) kdsB 5043999..5044763 (-) 765 WP_109754398.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  M3M50_RS22120 (M3M50_22120) - 5044760..5044945 (-) 186 WP_003179363.1 Trm112 family protein -
  M3M50_RS22125 (M3M50_22125) lpxK 5044968..5045978 (-) 1011 WP_212801280.1 tetraacyldisaccharide 4'-kinase -
  M3M50_RS22130 (M3M50_22130) - 5045978..5046406 (-) 429 WP_013694002.1 biopolymer transporter ExbD -
  M3M50_RS22135 (M3M50_22135) exbB 5046403..5047038 (-) 636 WP_162893858.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  M3M50_RS22140 (M3M50_22140) comA 5047134..5049380 (-) 2247 WP_249015406.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  M3M50_RS22145 (M3M50_22145) - 5049525..5050040 (+) 516 WP_046063671.1 DUF2062 domain-containing protein -
  M3M50_RS22150 (M3M50_22150) - 5050185..5050964 (-) 780 WP_072347169.1 ABC transporter permease -
  M3M50_RS22155 (M3M50_22155) - 5050967..5051899 (-) 933 WP_176689314.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22884.98 Da        Isoelectric Point: 7.3613

>NTDB_id=687108 M3M50_RS22135 WP_162893858.1 5046403..5047038(-) (exbB) [Pseudomonas bijieensis strain SP1]
MWELVKSGGWMMLPIILSSIAALGIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKDKLKELRASSPLGEVLAAGLAN
SKHGREIMKECIEEAAARVIHELERYINTLGTIAAMSPLLGLLGTVLGMIDIFSAFTGSGMTTNAAVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRVDELVVGMEQEAIKLVEVVQGDRDVDLAGDKK

Nucleotide


Download         Length: 636 bp        

>NTDB_id=687108 M3M50_RS22135 WP_162893858.1 5046403..5047038(-) (exbB) [Pseudomonas bijieensis strain SP1]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATCGCGGCACTGGGTATCGTTGC
CGAACGCCTGTGGACCCTGCGGGCCAGCCGCGTGACCCCGGAGCATCTGCTCGGGCAGGTCTGGGTCTGGATCAAGGACA
AGCAACTGAACAAGGACAAGCTCAAGGAACTGCGGGCCAGTTCGCCCTTGGGCGAAGTCCTCGCCGCCGGACTGGCGAAC
TCCAAGCATGGTCGCGAGATCATGAAGGAGTGCATCGAGGAAGCCGCCGCCCGGGTCATCCATGAACTGGAGCGCTACAT
CAATACCCTGGGGACCATCGCCGCCATGTCCCCGCTGCTGGGCCTGCTGGGTACCGTGTTGGGCATGATCGACATCTTCA
GTGCGTTTACCGGCTCGGGCATGACCACCAACGCCGCGGTACTGGCGGGGGGGATTTCCAAGGCCCTGATCACCACTGCC
GCCGGCCTGATGGTGGGTATTCCGGCCGTGTTCTTCCATCGGTTCCTGCAACGCCGCGTGGACGAACTGGTGGTTGGCAT
GGAGCAGGAAGCCATCAAGCTGGTCGAGGTGGTGCAAGGTGACCGTGATGTGGACCTGGCTGGGGACAAGAAGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

84.762

99.526

0.844