Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   M2J80_RS18060 Genome accession   NZ_CP097103
Coordinates   3958409..3960622 (-) Length   737 a.a.
NCBI ID   WP_270147556.1    Uniprot ID   A0AAX3KD68
Organism   Pseudomonas sp. NY11382     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3953409..3965622
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M2J80_RS18030 (M2J80_18010) - 3954423..3954887 (-) 465 WP_009685205.1 low molecular weight protein-tyrosine-phosphatase -
  M2J80_RS18035 (M2J80_18015) kdsB 3954887..3955651 (-) 765 WP_110679697.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  M2J80_RS18040 (M2J80_18020) - 3955648..3955833 (-) 186 WP_003247142.1 Trm112 family protein -
  M2J80_RS18045 (M2J80_18025) lpxK 3955877..3956878 (-) 1002 WP_110679696.1 tetraacyldisaccharide 4'-kinase -
  M2J80_RS18050 (M2J80_18030) - 3956878..3957312 (-) 435 WP_161893345.1 biopolymer transporter ExbD -
  M2J80_RS18055 (M2J80_18035) exbB 3957309..3957944 (-) 636 WP_161893344.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  M2J80_RS18060 (M2J80_18040) comA 3958409..3960622 (-) 2214 WP_270147556.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  M2J80_RS18065 (M2J80_18045) - 3960765..3961277 (+) 513 Protein_3539 DUF2062 domain-containing protein -
  M2J80_RS18070 (M2J80_18050) - 3961281..3962060 (-) 780 WP_009681883.1 ABC transporter permease -
  M2J80_RS18075 (M2J80_18055) - 3962057..3962989 (-) 933 WP_009681882.1 ABC transporter ATP-binding protein -
  M2J80_RS18080 (M2J80_18060) - 3963136..3963759 (-) 624 WP_110679737.1 glutathione S-transferase -

Sequence

Protein


Download         Length: 737 a.a.        Molecular weight: 79443.05 Da        Isoelectric Point: 9.0776

>NTDB_id=687060 M2J80_RS18060 WP_270147556.1 3958409..3960622(-) (comA) [Pseudomonas sp. NY11382]
MRTGMLALALGLLCLGFLPALPPDGWLWVLAACAGVCLFTRGWPLGCFLLGLCWASWSAQQALDDRLAAALDGRTLWLEG
RVVGLPARTAHGVRFELEAARSRRAELPQRLQVSWFDGPPVRAGEQWRLAVTLQRPAGLLNPHGPDREAQLLARRVGATG
TVKAGQLLAPASYGWRDSLRQRLLAVDANGRQAALVALVLGDGAGLAREDWQTLQATGTVHLLVISGQHIGLVAGLLYGL
VAGLARWGLWPARLPWLPSACALAMGAALAYGWLAGAGVPVQRACLMLAVVLLWRLRFRHLGAFLPLLLALVAVLLVEPL
AALLPGFWLSFGAVATLVFCFSARLGAWRPWQAWTRAQWVIAIGLLPVLLAVGLPVSLSAPLANLVAVPWVSLAVLPLAL
LGTLLLPLGEAGEAFLWLAGGLLDVLFRVLALVAQQRPAWVPPALPLWAWLLVCLGALLVLLPRGVPLRGLGGVMLLALW
VPREPVPFGQVEVWQLDVGQGLAVLLCTRHHNLLYDAGPARGDYDLGERVVLPTLRKLGVSHLDVMLISHAHADHAGGAG
AIQRGLPVERVIGGEALDDVQLQPCASGEQWEWDGVGFSLWRWADGRSSNDRSCVLLVEAQGERLLLAGDMEAGAERAWL
AATEAPRIDWLQSPHHGSRSSSSEAFMRATAPRGVLISRGRNNSFGHPHAQVVERYRRHGVVVHDTAVEGALRLVLGGWG
EVEGMRGQRRFWRARGE

Nucleotide


Download         Length: 2214 bp        

>NTDB_id=687060 M2J80_RS18060 WP_270147556.1 3958409..3960622(-) (comA) [Pseudomonas sp. NY11382]
ATGCGCACAGGGATGTTGGCGCTTGCGCTCGGGCTGCTGTGCCTGGGCTTTCTTCCTGCATTGCCACCGGACGGGTGGTT
GTGGGTGCTGGCGGCTTGCGCTGGCGTCTGCCTGTTCACCCGCGGGTGGCCATTGGGCTGTTTTCTGTTGGGGCTGTGCT
GGGCCAGCTGGTCTGCCCAGCAGGCCCTGGATGACCGGCTGGCGGCCGCTTTGGATGGCCGCACCTTGTGGCTGGAGGGG
CGGGTGGTCGGCTTGCCGGCGCGCACGGCGCACGGTGTGCGTTTCGAGCTGGAGGCCGCCCGTTCGCGCCGTGCCGAACT
GCCACAACGCCTGCAAGTCAGCTGGTTCGACGGGCCGCCGGTACGGGCCGGCGAGCAGTGGCGGCTGGCGGTGACCTTGC
AGCGCCCGGCCGGGTTGTTGAACCCGCATGGGCCGGACCGTGAAGCGCAGCTGTTGGCCCGGCGGGTCGGCGCTACCGGT
ACGGTGAAGGCGGGGCAGCTGCTGGCGCCGGCCAGCTATGGGTGGCGGGACTCGCTGCGCCAGCGCTTGCTGGCGGTCGA
TGCCAACGGCCGGCAGGCCGCGCTGGTGGCCCTGGTGCTCGGCGACGGGGCCGGCCTGGCGCGGGAAGATTGGCAGACGT
TGCAGGCCACCGGCACGGTGCACTTGTTGGTCATTTCCGGCCAGCACATTGGCCTGGTCGCCGGTTTGCTCTATGGCCTG
GTCGCCGGGTTGGCCCGCTGGGGGCTGTGGCCCGCACGGCTGCCATGGCTGCCCTCGGCGTGCGCGCTGGCCATGGGTGC
GGCACTGGCCTACGGCTGGCTGGCCGGCGCGGGGGTGCCGGTGCAGCGTGCCTGCCTGATGCTGGCCGTGGTGTTGCTCT
GGCGGCTGCGTTTTCGGCACCTGGGGGCGTTCCTGCCACTGTTGCTGGCGCTGGTGGCCGTGTTGCTGGTCGAGCCGCTG
GCGGCGCTGCTTCCGGGCTTCTGGCTGTCGTTCGGCGCCGTGGCCACGCTGGTGTTTTGCTTCAGTGCCCGCCTGGGGGC
ATGGCGGCCATGGCAGGCCTGGACGCGGGCGCAGTGGGTGATTGCCATCGGTTTGTTGCCGGTGCTGCTGGCCGTGGGCT
TGCCGGTGAGCCTGAGTGCGCCGCTGGCCAACCTGGTGGCGGTGCCATGGGTGAGCCTGGCGGTACTGCCGTTGGCCTTG
CTGGGCACCTTGCTGTTGCCGTTGGGTGAGGCTGGGGAGGCCTTTTTGTGGCTGGCAGGTGGCTTGCTGGACGTGCTGTT
TCGGGTGCTGGCGCTGGTTGCGCAGCAACGCCCGGCATGGGTGCCGCCAGCCCTGCCGCTATGGGCCTGGCTGCTGGTCT
GCCTGGGGGCTTTGCTGGTGCTGCTGCCCCGTGGTGTGCCGCTGCGAGGGTTGGGCGGGGTGATGCTGTTGGCCCTCTGG
GTGCCGCGCGAGCCGGTGCCTTTCGGGCAGGTGGAGGTCTGGCAACTGGACGTCGGCCAAGGCTTGGCGGTGCTGTTGTG
CACCCGGCATCACAATCTGCTCTATGACGCCGGGCCGGCGAGGGGCGACTACGACTTGGGGGAGCGGGTGGTGTTGCCGA
CCTTGCGCAAGTTGGGGGTGAGTCACCTGGACGTGATGCTGATCAGCCATGCCCACGCTGATCATGCCGGCGGTGCTGGG
GCGATACAGCGGGGTTTGCCGGTCGAGCGGGTTATCGGTGGGGAAGCGCTGGATGATGTTCAGTTGCAACCCTGTGCCAG
TGGCGAGCAATGGGAATGGGATGGCGTGGGTTTTTCGCTGTGGCGCTGGGCGGATGGGCGCAGCAGTAATGACCGCTCCT
GTGTGTTGCTGGTCGAGGCGCAGGGCGAGCGGTTGTTGCTGGCCGGCGACATGGAGGCAGGGGCGGAGCGTGCCTGGCTG
GCGGCGACCGAAGCGCCACGCATCGACTGGCTGCAGTCGCCGCACCATGGCAGCCGCAGTTCTTCCAGCGAGGCCTTCAT
GCGTGCCACGGCGCCGCGTGGGGTGCTGATATCGCGGGGGCGCAACAATAGTTTTGGGCACCCGCATGCGCAGGTGGTGG
AGCGGTACAGGCGGCATGGGGTGGTGGTGCATGACACGGCGGTGGAGGGGGCTTTGCGGTTGGTGCTGGGTGGGTGGGGG
GAGGTTGAGGGTATGCGGGGGCAGCGGCGGTTCTGGCGGGCTCGGGGGGAGTGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(198-464)

Domain of unknown function (DUF4131) (DUF4131)

(20-167)

Metallo-beta-lactamase superfamily (Lactamase_B)

(497-676)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

58.506

98.1

0.574
  comA Ralstonia pseudosolanacearum GMI1000

35.547

100

0.37