Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   M2J80_RS18055 Genome accession   NZ_CP097103
Coordinates   3957309..3957944 (-) Length   211 a.a.
NCBI ID   WP_161893344.1    Uniprot ID   A0AAX3KDI6
Organism   Pseudomonas sp. NY11382     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3952309..3962944
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M2J80_RS18015 (M2J80_17995) tnpB 3952520..3952855 (-) 336 WP_161893341.1 IS66 family insertion sequence element accessory protein TnpB -
  M2J80_RS18020 (M2J80_18000) - 3952852..3953172 (-) 321 WP_270147547.1 transposase -
  M2J80_RS18025 (M2J80_18005) murB 3953407..3954426 (-) 1020 WP_054905784.1 UDP-N-acetylmuramate dehydrogenase -
  M2J80_RS18030 (M2J80_18010) - 3954423..3954887 (-) 465 WP_009685205.1 low molecular weight protein-tyrosine-phosphatase -
  M2J80_RS18035 (M2J80_18015) kdsB 3954887..3955651 (-) 765 WP_110679697.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  M2J80_RS18040 (M2J80_18020) - 3955648..3955833 (-) 186 WP_003247142.1 Trm112 family protein -
  M2J80_RS18045 (M2J80_18025) lpxK 3955877..3956878 (-) 1002 WP_110679696.1 tetraacyldisaccharide 4'-kinase -
  M2J80_RS18050 (M2J80_18030) - 3956878..3957312 (-) 435 WP_161893345.1 biopolymer transporter ExbD -
  M2J80_RS18055 (M2J80_18035) exbB 3957309..3957944 (-) 636 WP_161893344.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  M2J80_RS18060 (M2J80_18040) comA 3958409..3960622 (-) 2214 WP_270147556.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  M2J80_RS18065 (M2J80_18045) - 3960765..3961277 (+) 513 Protein_3539 DUF2062 domain-containing protein -
  M2J80_RS18070 (M2J80_18050) - 3961281..3962060 (-) 780 WP_009681883.1 ABC transporter permease -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22883.22 Da        Isoelectric Point: 7.3616

>NTDB_id=687059 M2J80_RS18055 WP_161893344.1 3957309..3957944(-) (exbB) [Pseudomonas sp. NY11382]
MWELVKSGGWMMLPIILSSIAAMAIVIERLWTLRASRVTPPHLLGQVWIWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHELERYISTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGTQMTANAAVLAGGISKALVTTA
AGLMVGIPAVFFHRFLLRRIDELVVGMEQEAIKLVEVLQGDREVEVAGGKV

Nucleotide


Download         Length: 636 bp        

>NTDB_id=687059 M2J80_RS18055 WP_161893344.1 3957309..3957944(-) (exbB) [Pseudomonas sp. NY11382]
GTGTGGGAATTGGTCAAGTCCGGTGGTTGGATGATGCTGCCGATCATTCTGAGCTCCATCGCTGCCATGGCTATCGTCAT
CGAGCGCCTGTGGACCCTGCGCGCCAGCCGCGTCACCCCGCCACACTTGCTGGGCCAGGTCTGGATATGGATCAAGGACA
AGCAACTCACCAGTGACAAACTCAAGGCGCTGCGCGCCGATTCGCCACTGGGTGAGATCCTCGCCGCGGGCCTGGCCAAT
TCGCGCCATGGCCGCGAAATCATGAAAGAGTGCATCGAAGAGGCAGCTTCGCGCGTTATCCACGAGCTGGAGCGCTACAT
CAGCACCCTCGGCACCATCGCCGCCATGGCCCCGCTGCTGGGCCTGCTGGGCACCGTGCTGGGCATGATCGACATCTTCA
GTGCCTTCATGGGCACGCAGATGACCGCCAACGCCGCGGTACTGGCCGGTGGTATTTCCAAGGCCCTGGTCACCACGGCG
GCGGGCCTGATGGTTGGTATTCCGGCGGTGTTCTTCCACCGTTTCCTGCTGCGCCGCATCGATGAACTGGTGGTGGGCAT
GGAGCAGGAGGCGATCAAGCTGGTGGAAGTGCTGCAGGGCGACCGCGAAGTGGAAGTGGCCGGAGGCAAGGTGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.905

99.526

0.815