Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | PALA54_RS26015 | Genome accession | NZ_CP111032 |
| Coordinates | 5554482..5555354 (+) | Length | 290 a.a. |
| NCBI ID | WP_043085203.1 | Uniprot ID | - |
| Organism | Pseudomonas aeruginosa strain PALA54 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 5549482..5560354
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PALA54_RS25990 | pilE | 5549672..5550211 (-) | 540 | WP_033938465.1 | pilin | Machinery gene |
| PALA54_RS25995 (PALA54_05143) | pilB | 5550440..5552143 (+) | 1704 | WP_003116249.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| PALA54_RS26000 (PALA54_05144) | - | 5552147..5552611 (+) | 465 | Protein_5151 | type II secretion system F family protein | - |
| PALA54_RS26005 (PALA54_05145) | - | 5552641..5553669 (-) | 1029 | WP_041110544.1 | IS30-like element ISPsp4 family transposase | - |
| PALA54_RS26010 | pilC | 5553616..5554479 (+) | 864 | WP_269973640.1 | type II secretion system F family protein | Machinery gene |
| PALA54_RS26015 (PALA54_05148) | pilD | 5554482..5555354 (+) | 873 | WP_043085203.1 | type IV prepilin peptidase/methyltransferase PilD | Machinery gene |
| PALA54_RS26020 (PALA54_05149) | coaE | 5555351..5555962 (+) | 612 | WP_003094654.1 | dephospho-CoA kinase | - |
| PALA54_RS26025 (PALA54_05150) | yacG | 5555959..5556159 (+) | 201 | WP_003094656.1 | DNA gyrase inhibitor YacG | - |
| PALA54_RS26030 (PALA54_05151) | - | 5556196..5556405 (-) | 210 | WP_003094660.1 | hypothetical protein | - |
| PALA54_RS26035 (PALA54_05152) | - | 5556511..5557200 (-) | 690 | WP_003094662.1 | energy-coupling factor ABC transporter permease | - |
| PALA54_RS26040 (PALA54_05153) | - | 5557197..5557667 (-) | 471 | WP_003094664.1 | hypothetical protein | - |
| PALA54_RS26045 (PALA54_05154) | - | 5557664..5558089 (-) | 426 | WP_021264128.1 | GNAT family N-acetyltransferase | - |
| PALA54_RS26050 (PALA54_05155) | - | 5558222..5558851 (+) | 630 | WP_003094668.1 | DUF1780 domain-containing protein | - |
| PALA54_RS26055 (PALA54_05156) | - | 5558848..5559297 (+) | 450 | WP_021264127.1 | MOSC domain-containing protein | - |
| PALA54_RS26060 (PALA54_05157) | - | 5559323..5559493 (+) | 171 | WP_003094672.1 | DUF3094 family protein | - |
Sequence
Protein
Download Length: 290 a.a. Molecular weight: 31855.84 Da Isoelectric Point: 7.0816
>NTDB_id=686391 PALA54_RS26015 WP_043085203.1 5554482..5555354(+) (pilD) [Pseudomonas aeruginosa strain PALA54]
MELLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPSSACPHCGHEIR
PWENIPLVSYLALGGKCSSCKATIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK
MELLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPSSACPHCGHEIR
PWENIPLVSYLALGGKCSSCKATIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK
Nucleotide
Download Length: 873 bp
>NTDB_id=686391 PALA54_RS26015 WP_043085203.1 5554482..5555354(+) (pilD) [Pseudomonas aeruginosa strain PALA54]
ATGGAACTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCCATCCTCCTTGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAGGCCCGCGAAGCGCTCGGGC
TGGAGCCAGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAGTTCGGCGTGCCCGCACTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCACCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGTCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA
ATGGAACTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCCATCCTCCTTGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAGGCCCGCGAAGCGCTCGGGC
TGGAGCCAGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAGTTCGGCGTGCCCGCACTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCACCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGTCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
55.363 |
99.655 |
0.552 |
| pilD | Vibrio campbellii strain DS40M4 |
53.497 |
98.621 |
0.528 |
| pilD | Acinetobacter nosocomialis M2 |
50.352 |
97.931 |
0.493 |
| pilD | Acinetobacter baumannii D1279779 |
50.352 |
97.931 |
0.493 |
| pilD | Neisseria gonorrhoeae MS11 |
49.281 |
95.862 |
0.472 |