Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | M2919_RS07580 | Genome accession | NZ_CP097017 |
| Coordinates | 1570812..1571330 (+) | Length | 172 a.a. |
| NCBI ID | WP_248848548.1 | Uniprot ID | - |
| Organism | Vagococcus lutrae strain AT46b | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1560690..1591901 | 1570812..1571330 | within | 0 |
Gene organization within MGE regions
Location: 1560690..1591901
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M2919_RS07500 (M2919_07500) | - | 1560690..1562120 (-) | 1431 | WP_248848533.1 | recombinase family protein | - |
| M2919_RS07505 (M2919_07505) | - | 1562243..1562830 (-) | 588 | WP_248848534.1 | hypothetical protein | - |
| M2919_RS07510 (M2919_07510) | - | 1562924..1563520 (-) | 597 | WP_248848535.1 | LexA family protein | - |
| M2919_RS07515 (M2919_07515) | - | 1563695..1563892 (+) | 198 | WP_248848536.1 | helix-turn-helix transcriptional regulator | - |
| M2919_RS07520 (M2919_07520) | - | 1564057..1564755 (+) | 699 | WP_248848537.1 | Rha family transcriptional regulator | - |
| M2919_RS07525 (M2919_07525) | - | 1564768..1564911 (+) | 144 | WP_248848538.1 | hypothetical protein | - |
| M2919_RS07530 (M2919_07530) | - | 1565147..1565887 (+) | 741 | WP_376716154.1 | ERF family protein | - |
| M2919_RS07535 (M2919_07535) | - | 1565884..1566837 (+) | 954 | WP_248848539.1 | DUF1351 domain-containing protein | - |
| M2919_RS07540 (M2919_07540) | - | 1566849..1567511 (+) | 663 | WP_248848540.1 | putative HNHc nuclease | - |
| M2919_RS07545 (M2919_07545) | - | 1567514..1568347 (+) | 834 | WP_248848541.1 | conserved phage C-terminal domain-containing protein | - |
| M2919_RS07550 (M2919_07550) | - | 1568316..1569149 (+) | 834 | WP_248848542.1 | ATP-binding protein | - |
| M2919_RS07555 (M2919_07555) | - | 1569154..1569348 (+) | 195 | WP_248848543.1 | hypothetical protein | - |
| M2919_RS07560 (M2919_07560) | - | 1569332..1569487 (+) | 156 | WP_248848544.1 | hypothetical protein | - |
| M2919_RS07565 (M2919_07565) | - | 1569696..1569932 (+) | 237 | WP_248848545.1 | hypothetical protein | - |
| M2919_RS07570 (M2919_07570) | - | 1569957..1570328 (+) | 372 | WP_248848546.1 | hypothetical protein | - |
| M2919_RS07575 (M2919_07575) | - | 1570328..1570819 (+) | 492 | WP_248848547.1 | hypothetical protein | - |
| M2919_RS07580 (M2919_07580) | ssb | 1570812..1571330 (+) | 519 | WP_248848548.1 | single-stranded DNA-binding protein | Machinery gene |
| M2919_RS07585 (M2919_07585) | - | 1571342..1571560 (+) | 219 | WP_248848549.1 | hypothetical protein | - |
| M2919_RS07590 (M2919_07590) | - | 1571763..1572074 (+) | 312 | WP_248848551.1 | hypothetical protein | - |
| M2919_RS07595 (M2919_07595) | - | 1572292..1572753 (+) | 462 | WP_248849494.1 | helix-turn-helix domain-containing protein | - |
| M2919_RS07600 (M2919_07600) | - | 1572750..1574003 (+) | 1254 | WP_248848552.1 | hypothetical protein | - |
| M2919_RS07605 (M2919_07605) | - | 1574018..1575538 (+) | 1521 | WP_248848553.1 | phage portal protein | - |
| M2919_RS07610 (M2919_07610) | - | 1575477..1576403 (+) | 927 | WP_248848554.1 | phage minor head protein | - |
| M2919_RS07615 (M2919_07615) | - | 1576413..1576616 (+) | 204 | WP_248848555.1 | hypothetical protein | - |
| M2919_RS07620 (M2919_07620) | - | 1576728..1577315 (+) | 588 | WP_248848556.1 | phage scaffolding protein | - |
| M2919_RS07625 (M2919_07625) | - | 1577332..1578258 (+) | 927 | WP_248848557.1 | hypothetical protein | - |
| M2919_RS07630 (M2919_07630) | - | 1578263..1578535 (+) | 273 | WP_248848558.1 | hypothetical protein | - |
| M2919_RS07635 (M2919_07635) | - | 1578562..1579095 (+) | 534 | WP_248848559.1 | hypothetical protein | - |
| M2919_RS07640 (M2919_07640) | - | 1579095..1579424 (+) | 330 | WP_248848560.1 | head-tail adaptor protein | - |
| M2919_RS07645 (M2919_07645) | - | 1579417..1579851 (+) | 435 | WP_248848561.1 | HK97-gp10 family putative phage morphogenesis protein | - |
| M2919_RS07650 (M2919_07650) | - | 1579857..1580225 (+) | 369 | WP_248848562.1 | hypothetical protein | - |
| M2919_RS07655 (M2919_07655) | - | 1580225..1580827 (+) | 603 | WP_248848563.1 | hypothetical protein | - |
| M2919_RS07660 (M2919_07660) | - | 1580830..1581270 (+) | 441 | WP_248848564.1 | hypothetical protein | - |
| M2919_RS07665 (M2919_07665) | - | 1581617..1584205 (+) | 2589 | WP_248848565.1 | hypothetical protein | - |
| M2919_RS07670 (M2919_07670) | - | 1584209..1584865 (+) | 657 | WP_248848566.1 | hypothetical protein | - |
| M2919_RS07675 (M2919_07675) | - | 1584865..1587807 (+) | 2943 | WP_248848567.1 | phage tail spike protein | - |
| M2919_RS07680 (M2919_07680) | - | 1587808..1589778 (+) | 1971 | WP_248848568.1 | DUF859 family phage minor structural protein | - |
| M2919_RS07685 (M2919_07685) | - | 1589772..1590092 (+) | 321 | WP_248848569.1 | hypothetical protein | - |
| M2919_RS07690 (M2919_07690) | - | 1590255..1590596 (+) | 342 | WP_248848570.1 | hypothetical protein | - |
| M2919_RS07695 (M2919_07695) | - | 1590602..1590868 (+) | 267 | WP_248848571.1 | phage holin family protein | - |
| M2919_RS07700 (M2919_07700) | - | 1590873..1591901 (+) | 1029 | WP_248848572.1 | N-acetylmuramoyl-L-alanine amidase | - |
Sequence
Protein
Download Length: 172 a.a. Molecular weight: 19468.21 Da Isoelectric Point: 5.2670
>NTDB_id=686235 M2919_RS07580 WP_248848548.1 1570812..1571330(+) (ssb) [Vagococcus lutrae strain AT46b]
MINNTVLVGRLTRDPDLRYTSNGIAAASFTLAVNRNFTNASGEREADFINCVIWRKAAENLANYARKGTLIGITGRIQTR
NYENQQGQRVYVTEVVADNFQLLEKRQDNSGGGYQNNQQGNYNQNNFNNTQNQNQTFRQSSMPGLDERGFNTDSEPFGRS
NKIEINDDDLPF
MINNTVLVGRLTRDPDLRYTSNGIAAASFTLAVNRNFTNASGEREADFINCVIWRKAAENLANYARKGTLIGITGRIQTR
NYENQQGQRVYVTEVVADNFQLLEKRQDNSGGGYQNNQQGNYNQNNFNNTQNQNQTFRQSSMPGLDERGFNTDSEPFGRS
NKIEINDDDLPF
Nucleotide
Download Length: 519 bp
>NTDB_id=686235 M2919_RS07580 WP_248848548.1 1570812..1571330(+) (ssb) [Vagococcus lutrae strain AT46b]
ATGATTAATAATACGGTACTTGTTGGCCGTCTGACACGAGATCCGGATTTAAGATATACCAGTAACGGAATAGCGGCAGC
AAGTTTCACATTGGCAGTAAACAGAAACTTTACTAATGCAAGCGGAGAAAGAGAAGCAGACTTCATTAATTGTGTGATAT
GGAGAAAAGCAGCAGAGAATCTAGCAAACTACGCAAGAAAAGGAACACTTATTGGAATCACAGGTCGGATCCAGACAAGA
AATTATGAGAATCAGCAAGGCCAAAGAGTATACGTAACAGAAGTTGTTGCTGATAACTTTCAGTTGCTCGAAAAACGGCA
AGATAACAGCGGTGGTGGCTACCAAAATAACCAACAGGGGAATTATAACCAAAACAATTTTAACAACACACAGAACCAAA
ATCAGACGTTTAGACAAAGTAGTATGCCTGGACTGGATGAAAGAGGTTTTAATACAGATAGTGAACCATTTGGACGTAGT
AACAAGATTGAAATTAATGATGATGACTTGCCATTTTAA
ATGATTAATAATACGGTACTTGTTGGCCGTCTGACACGAGATCCGGATTTAAGATATACCAGTAACGGAATAGCGGCAGC
AAGTTTCACATTGGCAGTAAACAGAAACTTTACTAATGCAAGCGGAGAAAGAGAAGCAGACTTCATTAATTGTGTGATAT
GGAGAAAAGCAGCAGAGAATCTAGCAAACTACGCAAGAAAAGGAACACTTATTGGAATCACAGGTCGGATCCAGACAAGA
AATTATGAGAATCAGCAAGGCCAAAGAGTATACGTAACAGAAGTTGTTGCTGATAACTTTCAGTTGCTCGAAAAACGGCA
AGATAACAGCGGTGGTGGCTACCAAAATAACCAACAGGGGAATTATAACCAAAACAATTTTAACAACACACAGAACCAAA
ATCAGACGTTTAGACAAAGTAGTATGCCTGGACTGGATGAAAGAGGTTTTAATACAGATAGTGAACCATTTGGACGTAGT
AACAAGATTGAAATTAATGATGATGACTTGCCATTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
57.386 |
100 |
0.587 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
48.99 |
100 |
0.564 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
62.264 |
61.628 |
0.384 |