Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CCX79_RS00715 Genome accession   NZ_AP017935
Coordinates   145892..146458 (-) Length   188 a.a.
NCBI ID   WP_002815494.1    Uniprot ID   A0A223XQS1
Organism   Leuconostoc suionicum strain LT-38     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 140892..151458
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCX79_RS00695 (LEUCM_00136) dnaB 141443..142906 (-) 1464 WP_072614362.1 replicative DNA helicase -
  CCX79_RS00700 (LEUCM_00137) rplI 142908..143360 (-) 453 WP_042251058.1 50S ribosomal protein L9 -
  CCX79_RS00705 (LEUCM_00138) - 143378..145405 (-) 2028 WP_072614363.1 DHH family phosphoesterase -
  CCX79_RS00710 (LEUCM_00139) rpsR 145576..145860 (-) 285 WP_004911134.1 30S ribosomal protein S18 -
  CCX79_RS00715 (LEUCM_00140) ssb 145892..146458 (-) 567 WP_002815494.1 single-stranded DNA-binding protein Machinery gene
  CCX79_RS00720 (LEUCM_00141) rpsF 146492..146788 (-) 297 WP_011680503.1 30S ribosomal protein S6 -
  CCX79_RS00725 (LEUCM_00142) pepV 147046..148481 (-) 1436 Protein_137 dipeptidase PepV -
  CCX79_RS00730 (LEUCM_00144) - 148478..149305 (-) 828 WP_072614364.1 energy-coupling factor transporter transmembrane component T -
  CCX79_RS00735 (LEUCM_00145) - 149307..150983 (-) 1677 WP_072614365.1 DUF3744 domain-containing protein -

Sequence

Protein


Download         Length: 188 a.a.        Molecular weight: 20159.69 Da        Isoelectric Point: 4.5478

>NTDB_id=68618 CCX79_RS00715 WP_002815494.1 145892..146458(-) (ssb) [Leuconostoc suionicum strain LT-38]
MINRVVLIGRLTRDVELRYTQSGVAVGTFSLAVNRQFTNASGEREADFINAVIWRKAAENFANFTGKGALVAVEGRLQTR
NYENNAGQRVYVTEVVVDNFSLLESRAESEKRRSQNGSSASNNGADNFSGSNDHSFGGNDNSFNGVDPFASASSNSNTQS
SASSNSAPNPFAASGNTEIDISDDDLPF

Nucleotide


Download         Length: 567 bp        

>NTDB_id=68618 CCX79_RS00715 WP_002815494.1 145892..146458(-) (ssb) [Leuconostoc suionicum strain LT-38]
ATGATTAATCGAGTAGTATTAATTGGGCGATTGACCCGTGATGTTGAATTACGTTACACACAATCAGGTGTAGCAGTCGG
TACGTTTAGCTTGGCGGTTAACCGTCAGTTCACCAACGCAAGTGGTGAACGTGAGGCTGACTTTATTAACGCCGTTATTT
GGCGAAAAGCAGCTGAAAACTTTGCAAACTTCACTGGAAAAGGTGCACTTGTGGCTGTTGAAGGTCGTTTGCAAACAAGA
AATTATGAAAATAATGCTGGCCAACGCGTTTACGTGACGGAAGTTGTTGTTGATAATTTCTCATTACTCGAATCTCGCGC
TGAAAGTGAAAAGCGTCGTTCTCAGAACGGATCATCGGCATCTAATAATGGTGCTGACAACTTCAGCGGATCAAACGATC
ATTCGTTTGGCGGTAATGATAACTCATTTAACGGTGTTGATCCTTTTGCAAGTGCGAGCTCAAACTCAAATACGCAATCA
TCAGCTTCGTCAAATAGTGCCCCTAACCCATTTGCGGCTAGTGGCAATACAGAAATTGATATATCAGATGATGATTTACC
ATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A223XQS1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

62.766

100

0.628
  ssbA Bacillus subtilis subsp. subtilis str. 168

51.596

100

0.516

Multiple sequence alignment