Detailed information
Bioinformatically predicted
Overview
| Name | comGE | Type | Machinery gene |
| Locus tag | CCX78_RS03250 | Genome accession | NZ_AP017931 |
| Coordinates | 619806..620111 (+) | Length | 101 a.a. |
| NCBI ID | WP_011374997.1 | Uniprot ID | Q38W27 |
| Organism | Latilactobacillus sakei strain LK-145 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 614806..625111
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CCX78_RS03215 (LASAK_00635) | - | 615300..615692 (-) | 393 | WP_231952369.1 | hypothetical protein | - |
| CCX78_RS03220 (LASAK_00636) | - | 615771..616271 (+) | 501 | WP_011375003.1 | VanZ family protein | - |
| CCX78_RS03225 (LASAK_00637) | - | 616362..617093 (+) | 732 | WP_011375002.1 | YebC/PmpR family DNA-binding transcriptional regulator | - |
| CCX78_RS03230 (LASAK_00638) | comGA | 617209..618099 (+) | 891 | WP_016265378.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| CCX78_RS03235 (LASAK_00639) | comGB | 618092..619099 (+) | 1008 | WP_011375000.1 | type II secretion system F family protein | Machinery gene |
| CCX78_RS03240 (LASAK_00640) | comGC | 619096..619395 (+) | 300 | WP_011374999.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | Machinery gene |
| CCX78_RS03245 (LASAK_00641) | comGD | 619367..619819 (+) | 453 | WP_035145016.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| CCX78_RS03250 (LASAK_00642) | comGE | 619806..620111 (+) | 306 | WP_011374997.1 | hypothetical protein | Machinery gene |
| CCX78_RS03255 (LASAK_00643) | comGF | 620077..620598 (+) | 522 | WP_112234088.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| CCX78_RS03260 (LASAK_00644) | - | 620633..620899 (+) | 267 | WP_172425585.1 | hypothetical protein | - |
| CCX78_RS03265 (LASAK_00645) | - | 621014..622033 (+) | 1020 | WP_231952370.1 | class I SAM-dependent methyltransferase | - |
| CCX78_RS03270 (LASAK_00646) | - | 622055..623251 (+) | 1197 | WP_096584647.1 | acetate/propionate family kinase | - |
| CCX78_RS03275 (LASAK_00647) | - | 623306..623764 (+) | 459 | WP_096584650.1 | laaL | - |
| CCX78_RS03285 (LASAK_00648) | - | 624307..624672 (-) | 366 | WP_011374991.1 | DUF805 domain-containing protein | - |
| CCX78_RS10425 | - | 624798..624929 (-) | 132 | WP_231952371.1 | TraX family protein | - |
Sequence
Protein
Download Length: 101 a.a. Molecular weight: 11425.39 Da Isoelectric Point: 11.1577
>NTDB_id=68587 CCX78_RS03250 WP_011374997.1 619806..620111(+) (comGE) [Latilactobacillus sakei strain LK-145]
MFRSRPAFSLVENIIALTLVLGACWLLTVSLLHFKQQQTLKQQQVAQQAVLAMAAEQLRAHQTVKKRWQMGRTIYTVTAN
QQKLKVTTKAGESVAINWTTD
MFRSRPAFSLVENIIALTLVLGACWLLTVSLLHFKQQQTLKQQQVAQQAVLAMAAEQLRAHQTVKKRWQMGRTIYTVTAN
QQKLKVTTKAGESVAINWTTD
Nucleotide
Download Length: 306 bp
>NTDB_id=68587 CCX78_RS03250 WP_011374997.1 619806..620111(+) (comGE) [Latilactobacillus sakei strain LK-145]
ATGTTCAGAAGTAGGCCGGCTTTTTCACTCGTTGAAAATATCATCGCCTTAACCTTAGTATTAGGGGCTTGCTGGCTATT
AACGGTAAGTCTACTACACTTTAAGCAACAACAAACGCTTAAACAACAGCAAGTTGCACAACAGGCGGTTCTAGCAATGG
CCGCTGAGCAGTTGAGAGCGCATCAGACAGTGAAAAAACGCTGGCAAATGGGGCGAACAATCTATACGGTGACGGCTAAT
CAGCAGAAATTAAAGGTAACCACAAAGGCAGGTGAGTCGGTTGCGATTAATTGGACGACCGATTAA
ATGTTCAGAAGTAGGCCGGCTTTTTCACTCGTTGAAAATATCATCGCCTTAACCTTAGTATTAGGGGCTTGCTGGCTATT
AACGGTAAGTCTACTACACTTTAAGCAACAACAAACGCTTAAACAACAGCAAGTTGCACAACAGGCGGTTCTAGCAATGG
CCGCTGAGCAGTTGAGAGCGCATCAGACAGTGAAAAAACGCTGGCAAATGGGGCGAACAATCTATACGGTGACGGCTAAT
CAGCAGAAATTAAAGGTAACCACAAAGGCAGGTGAGTCGGTTGCGATTAATTGGACGACCGATTAA
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGE | Latilactobacillus sakei subsp. sakei 23K |
100 |
100 |
1 |