Detailed information
Bioinformatically predicted
Overview
| Name | comGB | Type | Machinery gene |
| Locus tag | CCX78_RS03235 | Genome accession | NZ_AP017931 |
| Coordinates | 618092..619099 (+) | Length | 335 a.a. |
| NCBI ID | WP_011375000.1 | Uniprot ID | Q38W24 |
| Organism | Latilactobacillus sakei strain LK-145 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 613092..624099
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CCX78_RS03205 (LASAK_00634) | - | 613722..615113 (+) | 1392 | WP_096584638.1 | hypothetical protein | - |
| CCX78_RS03215 (LASAK_00635) | - | 615300..615692 (-) | 393 | WP_231952369.1 | hypothetical protein | - |
| CCX78_RS03220 (LASAK_00636) | - | 615771..616271 (+) | 501 | WP_011375003.1 | VanZ family protein | - |
| CCX78_RS03225 (LASAK_00637) | - | 616362..617093 (+) | 732 | WP_011375002.1 | YebC/PmpR family DNA-binding transcriptional regulator | - |
| CCX78_RS03230 (LASAK_00638) | comGA | 617209..618099 (+) | 891 | WP_016265378.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| CCX78_RS03235 (LASAK_00639) | comGB | 618092..619099 (+) | 1008 | WP_011375000.1 | type II secretion system F family protein | Machinery gene |
| CCX78_RS03240 (LASAK_00640) | comGC | 619096..619395 (+) | 300 | WP_011374999.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | Machinery gene |
| CCX78_RS03245 (LASAK_00641) | comGD | 619367..619819 (+) | 453 | WP_035145016.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| CCX78_RS03250 (LASAK_00642) | comGE | 619806..620111 (+) | 306 | WP_011374997.1 | hypothetical protein | Machinery gene |
| CCX78_RS03255 (LASAK_00643) | comGF | 620077..620598 (+) | 522 | WP_112234088.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| CCX78_RS03260 (LASAK_00644) | - | 620633..620899 (+) | 267 | WP_172425585.1 | hypothetical protein | - |
| CCX78_RS03265 (LASAK_00645) | - | 621014..622033 (+) | 1020 | WP_231952370.1 | class I SAM-dependent methyltransferase | - |
| CCX78_RS03270 (LASAK_00646) | - | 622055..623251 (+) | 1197 | WP_096584647.1 | acetate/propionate family kinase | - |
| CCX78_RS03275 (LASAK_00647) | - | 623306..623764 (+) | 459 | WP_096584650.1 | laaL | - |
Sequence
Protein
Download Length: 335 a.a. Molecular weight: 38450.42 Da Isoelectric Point: 9.5442
>NTDB_id=68584 CCX78_RS03235 WP_011375000.1 618092..619099(+) (comGB) [Latilactobacillus sakei strain LK-145]
MYKLRQQAQFYADFLQLLGRLLENGFSLQQAFAFLPIVFPKQRQWLNQVNQALEKGDSLAVSLAHADFPTDYVGQIELTE
LQGNLGQCLWHLGRIQSIRQKRRREIRGVLAYPLFLLAFLGGLIGLLRHYLLPEIAQITPESNQTGSPLSRIILWGFLLV
LVLLIMGSGLFMVYRRLPVLVRLQKAFKWPIIGRDIQQYYHYCLLFDLSTCLQNGLKLTEICALQKQLQQNTWLVTLVAQ
LEVVLASGQSLDAYLSRSAFFPQSLRLVLAKHNLTQQTTDEITMLANLQYTELQKQLQRKVSWLQPILFILIGLIIICTY
LSILLPLYQTMEGIS
MYKLRQQAQFYADFLQLLGRLLENGFSLQQAFAFLPIVFPKQRQWLNQVNQALEKGDSLAVSLAHADFPTDYVGQIELTE
LQGNLGQCLWHLGRIQSIRQKRRREIRGVLAYPLFLLAFLGGLIGLLRHYLLPEIAQITPESNQTGSPLSRIILWGFLLV
LVLLIMGSGLFMVYRRLPVLVRLQKAFKWPIIGRDIQQYYHYCLLFDLSTCLQNGLKLTEICALQKQLQQNTWLVTLVAQ
LEVVLASGQSLDAYLSRSAFFPQSLRLVLAKHNLTQQTTDEITMLANLQYTELQKQLQRKVSWLQPILFILIGLIIICTY
LSILLPLYQTMEGIS
Nucleotide
Download Length: 1008 bp
>NTDB_id=68584 CCX78_RS03235 WP_011375000.1 618092..619099(+) (comGB) [Latilactobacillus sakei strain LK-145]
ATGTATAAGTTACGACAACAAGCGCAATTTTACGCTGATTTCTTGCAGTTATTGGGGCGGCTATTAGAGAACGGTTTCTC
ATTGCAACAAGCTTTTGCCTTCTTACCGATTGTCTTCCCAAAACAACGACAGTGGTTAAATCAGGTGAATCAAGCCCTTG
AAAAAGGCGACAGTCTAGCAGTCAGTTTAGCGCATGCTGATTTTCCAACTGATTATGTTGGTCAGATTGAACTAACCGAA
TTACAAGGTAATCTCGGGCAATGTTTATGGCATTTAGGCCGGATTCAAAGTATCCGCCAAAAACGCCGCCGAGAAATTCG
GGGTGTGCTAGCTTATCCGTTATTTCTTTTGGCTTTTTTAGGCGGCTTAATCGGTTTATTACGCCATTATTTATTACCTG
AGATTGCCCAGATAACGCCCGAGTCAAACCAGACAGGCTCGCCGCTTAGTCGCATCATATTGTGGGGCTTTTTGTTAGTG
CTAGTCCTTTTGATAATGGGCAGCGGTCTTTTTATGGTTTACCGCCGGTTACCGGTTTTAGTTCGATTACAAAAAGCGTT
CAAGTGGCCAATCATTGGGCGTGATATTCAGCAGTATTATCATTATTGTTTATTATTTGATTTGAGCACTTGTCTGCAAA
ACGGGCTTAAGTTAACAGAAATTTGTGCTTTACAGAAGCAACTGCAACAAAATACATGGCTGGTGACCTTGGTAGCACAA
TTGGAAGTCGTACTCGCTTCAGGGCAATCATTGGATGCTTATCTTAGTCGCTCTGCATTTTTTCCACAGTCGTTACGATT
GGTATTAGCTAAGCATAATCTCACGCAACAGACGACCGATGAGATCACCATGCTAGCTAACCTGCAGTATACGGAACTAC
AGAAGCAATTACAGCGGAAAGTGAGCTGGTTACAACCTATTTTATTTATCTTAATTGGGCTCATTATTATTTGTACGTAT
CTCAGTATTTTATTACCGCTGTATCAAACAATGGAGGGAATTTCATGA
ATGTATAAGTTACGACAACAAGCGCAATTTTACGCTGATTTCTTGCAGTTATTGGGGCGGCTATTAGAGAACGGTTTCTC
ATTGCAACAAGCTTTTGCCTTCTTACCGATTGTCTTCCCAAAACAACGACAGTGGTTAAATCAGGTGAATCAAGCCCTTG
AAAAAGGCGACAGTCTAGCAGTCAGTTTAGCGCATGCTGATTTTCCAACTGATTATGTTGGTCAGATTGAACTAACCGAA
TTACAAGGTAATCTCGGGCAATGTTTATGGCATTTAGGCCGGATTCAAAGTATCCGCCAAAAACGCCGCCGAGAAATTCG
GGGTGTGCTAGCTTATCCGTTATTTCTTTTGGCTTTTTTAGGCGGCTTAATCGGTTTATTACGCCATTATTTATTACCTG
AGATTGCCCAGATAACGCCCGAGTCAAACCAGACAGGCTCGCCGCTTAGTCGCATCATATTGTGGGGCTTTTTGTTAGTG
CTAGTCCTTTTGATAATGGGCAGCGGTCTTTTTATGGTTTACCGCCGGTTACCGGTTTTAGTTCGATTACAAAAAGCGTT
CAAGTGGCCAATCATTGGGCGTGATATTCAGCAGTATTATCATTATTGTTTATTATTTGATTTGAGCACTTGTCTGCAAA
ACGGGCTTAAGTTAACAGAAATTTGTGCTTTACAGAAGCAACTGCAACAAAATACATGGCTGGTGACCTTGGTAGCACAA
TTGGAAGTCGTACTCGCTTCAGGGCAATCATTGGATGCTTATCTTAGTCGCTCTGCATTTTTTCCACAGTCGTTACGATT
GGTATTAGCTAAGCATAATCTCACGCAACAGACGACCGATGAGATCACCATGCTAGCTAACCTGCAGTATACGGAACTAC
AGAAGCAATTACAGCGGAAAGTGAGCTGGTTACAACCTATTTTATTTATCTTAATTGGGCTCATTATTATTTGTACGTAT
CTCAGTATTTTATTACCGCTGTATCAAACAATGGAGGGAATTTCATGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGB | Latilactobacillus sakei subsp. sakei 23K |
100 |
100 |
1 |