Detailed information NTG0685820

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: M0220_RS16090
• Genome accession: NZ_CP096973
• Coordinates: 3534141..3534986 (-)
• Length: 281 a.a.
• NCBI ID: WP_264018215.1
• Uniprot ID: A0AA46TPX2
• Organism: Halomonas qinghailakensis strain ZZQ-149
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3529141..3539986

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
M0220_RS16065 (M0220_16020)	-	3530354..3530728 (+)	375	WP_264018213.1	histone-like nucleoid-structuring protein, MvaT/MvaU family	-
M0220_RS16070 (M0220_16025)	-	3531793..3532128 (+)	336	WP_030072830.1	hypothetical protein	-
M0220_RS16075 (M0220_16030)	-	3532143..3533015 (-)	873	WP_030072832.1	hypothetical protein	-
M0220_RS16080 (M0220_16035)	yacG	3533203..3533436 (-)	234	WP_030072834.1	DNA gyrase inhibitor YacG	-
M0220_RS16085 (M0220_16040)	coaE	3533504..3534100 (-)	597	WP_264018214.1	dephospho-CoA kinase	-
M0220_RS16090 (M0220_16045)	pilD	3534141..3534986 (-)	846	WP_264018215.1	A24 family peptidase	Machinery gene
M0220_RS16095 (M0220_16050)	-	3535028..3536257 (-)	1230	WP_264018216.1	type II secretion system F family protein	-
M0220_RS16100 (M0220_16055)	pilB	3536266..3538020 (-)	1755	WP_030072841.1	type IV-A pilus assembly ATPase PilB	Machinery gene
M0220_RS16105 (M0220_16060)	-	3538262..3538669 (+)	408	WP_264018217.1	pilin	-
M0220_RS16110 (M0220_16065)	-	3538764..3539153 (+)	390	WP_035536546.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
M0220_RS16115 (M0220_16070)	-	3539247..3539705 (+)	459	WP_264019238.1	anti-virulence regulator CigR family protein	-

Sequence

Protein

• Length: 281 a.a.
• Molecular weight: 30415.66 Da
• Isoelectric Point: 8.3690

>NTDB_id=685820 M0220_RS16090 WP_264018215.1 3534141..3534986(-) (pilD) [Halomonas qinghailakensis strain ZZQ-149]
MGLPPSVITLFALLIGLCFGSFLNVVITRLPVMLMRGWRSEARASLELPEESSPRFNLATPGSMCPRCEQPIAWHDNLPL
VGWLKRRGKCAHCQTTISAQYPLVELMGGLLAVVVVMLHGATLSAAFIYGACLTLLALAVIDFRTYLLPDILTLPLLWAG
LVYQLLFQPLLLSGAVMGAIAGYLVLWSFYWLFKLVTGKEGMGYGDFKLLAALGAWLGWGMLPLLLILSAGVGAIVGLVA
QALSPRLRGQPLPFGPFLALAGWVCLLVGNELIALYTSLLY

Nucleotide

• Length: 846 bp

>NTDB_id=685820 M0220_RS16090 WP_264018215.1 3534141..3534986(-) (pilD) [Halomonas qinghailakensis strain ZZQ-149]
ATGGGCTTACCGCCGAGCGTTATTACTCTTTTTGCGTTACTGATTGGCCTCTGTTTTGGCAGTTTTCTTAATGTTGTCAT
CACCCGCTTGCCCGTGATGTTAATGCGCGGCTGGCGCAGTGAGGCACGCGCCTCTCTTGAGTTACCCGAAGAGTCGTCAC
CCCGCTTTAATCTTGCGACCCCTGGATCGATGTGCCCGCGTTGCGAACAGCCCATTGCCTGGCACGACAATCTTCCCTTA
GTAGGCTGGTTAAAAAGAAGGGGCAAATGCGCGCATTGCCAAACGACCATTAGCGCCCAATATCCGCTCGTTGAGCTAAT
GGGCGGACTGCTTGCCGTAGTTGTTGTTATGTTACATGGGGCTACGCTAAGCGCGGCGTTTATTTATGGCGCTTGTTTAA
CGCTACTTGCCTTGGCAGTCATTGATTTTCGCACCTATTTACTGCCTGATATATTGACCTTGCCACTGCTATGGGCCGGC
TTGGTATACCAGTTACTTTTTCAGCCTCTGTTGCTATCAGGCGCTGTCATGGGCGCAATAGCGGGCTATCTTGTGCTGTG
GAGCTTTTATTGGCTGTTTAAGCTAGTAACCGGTAAAGAAGGCATGGGCTATGGGGATTTCAAATTGCTCGCAGCACTTG
GCGCTTGGTTAGGTTGGGGTATGTTACCGCTGTTGCTTATTTTATCGGCAGGCGTTGGCGCAATAGTTGGATTAGTTGCC
CAGGCCCTCTCCCCACGCTTACGTGGACAACCTCTCCCCTTTGGCCCCTTTCTCGCCCTGGCAGGCTGGGTTTGCTTACT
TGTCGGCAACGAGTTAATAGCACTGTATACGTCGTTGCTTTATTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (132-238)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (14-117)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	50.542	98.577	0.498
pilD	Vibrio campbellii strain DS40M4	46.29	100	0.466
pilD	Acinetobacter baumannii D1279779	48.134	95.374	0.459
pilD	Acinetobacter nosocomialis M2	48.134	95.374	0.459
pilD	Neisseria gonorrhoeae MS11	45.455	97.865	0.445