Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   OHI04_RS11780 Genome accession   NZ_CP110849
Coordinates   2345242..2345835 (-) Length   197 a.a.
NCBI ID   WP_017865241.1    Uniprot ID   -
Organism   Lactococcus lactis strain VHProbi V60     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2340242..2350835
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHI04_RS11745 (OHI04_11750) - 2340376..2340648 (+) 273 WP_023190154.1 chorismate mutase -
  OHI04_RS11750 (OHI04_11755) - 2340737..2341183 (-) 447 WP_003131961.1 hypothetical protein -
  OHI04_RS11755 (OHI04_11760) - 2341401..2341601 (+) 201 WP_003131983.1 hypothetical protein -
  OHI04_RS11760 (OHI04_11765) glnA 2341660..2343000 (-) 1341 WP_003131984.1 type I glutamate--ammonia ligase -
  OHI04_RS11765 (OHI04_11770) - 2343062..2343427 (-) 366 WP_003131985.1 MerR family transcriptional regulator -
  OHI04_RS11770 (OHI04_11775) - 2343528..2343965 (-) 438 WP_039116513.1 low molecular weight protein-tyrosine-phosphatase -
  OHI04_RS11775 (OHI04_11780) ruvB 2344114..2345115 (-) 1002 WP_003131994.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  OHI04_RS11780 (OHI04_11785) ruvA 2345242..2345835 (-) 594 WP_017865241.1 Holliday junction branch migration protein RuvA Machinery gene
  OHI04_RS11785 (OHI04_11790) hexB 2345948..2347918 (-) 1971 WP_039116757.1 DNA mismatch repair endonuclease MutL Machinery gene
  OHI04_RS11790 (OHI04_11795) - 2348047..2348742 (-) 696 WP_023190211.1 hypothetical protein -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21180.75 Da        Isoelectric Point: 5.8218

>NTDB_id=685645 OHI04_RS11780 WP_017865241.1 2345242..2345835(-) (ruvA) [Lactococcus lactis strain VHProbi V60]
MFEYLNGKLVKISPTNIVIDVAGIGYLISVANPYAWSALMNTEVKIYVHQVIREDAHSLYGFVNEAEKALFLRLISVSGI
GPKSALAIIAAADNEGLITAIDNSDIKYLTKFPGVGKKTAMQMVLDLAGKFDATGTVGISLLEAGPAGNLALEEAIEALQ
ALGYKATELKKIEKKLAQETGLTSEEYIKSALKLMMK

Nucleotide


Download         Length: 594 bp        

>NTDB_id=685645 OHI04_RS11780 WP_017865241.1 2345242..2345835(-) (ruvA) [Lactococcus lactis strain VHProbi V60]
ATGTTTGAATATCTTAATGGAAAATTAGTAAAAATTTCCCCAACAAATATTGTAATTGATGTAGCAGGAATTGGTTATCT
TATCAGTGTAGCTAACCCTTACGCTTGGTCGGCTTTGATGAACACAGAAGTAAAAATTTATGTTCATCAAGTCATTCGCG
AAGATGCCCACAGCCTCTATGGTTTTGTTAACGAGGCCGAAAAAGCTTTATTCTTACGTCTGATCAGCGTTTCTGGGATT
GGGCCAAAATCAGCTCTGGCCATCATTGCGGCGGCTGATAACGAAGGTTTAATCACTGCTATTGACAATAGTGATATCAA
GTATTTAACTAAATTTCCAGGAGTTGGTAAAAAAACGGCCATGCAGATGGTGCTTGATTTGGCTGGGAAATTTGATGCGA
CAGGAACTGTAGGTATTTCTCTTCTTGAGGCTGGACCTGCTGGAAATCTTGCTTTGGAAGAAGCGATTGAAGCGCTACAA
GCTTTGGGTTATAAAGCAACAGAATTGAAGAAAATTGAGAAAAAATTAGCTCAAGAAACAGGTCTGACCAGCGAAGAATA
TATCAAATCAGCCTTAAAACTTATGATGAAATAA

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-61)

RuvA, C-terminal domain (RuvA_C)

(151-196)

Helix-hairpin-helix domain (HHH_5)

(71-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

60.101

100

0.604
  ruvA Streptococcus pneumoniae R6

60.101

100

0.604
  ruvA Streptococcus pneumoniae D39

60.101

100

0.604
  ruvA Bacillus subtilis subsp. subtilis str. 168

44.828

100

0.462