Detailed information    

insolico Bioinformatically predicted

Overview

Name   yaaT   Type   Regulator
Locus tag   OHI04_RS02125 Genome accession   NZ_CP110849
Coordinates   422481..423263 (+) Length   260 a.a.
NCBI ID   WP_039114615.1    Uniprot ID   -
Organism   Lactococcus lactis strain VHProbi V60     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 417481..428263
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHI04_RS02100 (OHI04_02100) vicX 417506..418318 (-) 813 WP_039114610.1 MBL fold metallo-hydrolase Regulator
  OHI04_RS02105 (OHI04_02105) vicK 418487..419929 (-) 1443 WP_052230896.1 sensor histidine kinase Regulator
  OHI04_RS02110 (OHI04_02110) yycF 419922..420623 (-) 702 WP_003131580.1 response regulator YycF -
  OHI04_RS02115 (OHI04_02115) tmk 420801..421436 (+) 636 WP_012897230.1 dTMP kinase -
  OHI04_RS02120 (OHI04_02120) - 421569..422429 (+) 861 WP_003131573.1 DNA polymerase III subunit delta' -
  OHI04_RS02125 (OHI04_02125) yaaT 422481..423263 (+) 783 WP_039114615.1 PSP1 domain-containing protein Regulator
  OHI04_RS02130 (OHI04_02130) yabA 423256..423582 (+) 327 WP_003131570.1 DNA replication initiation control protein YabA -
  OHI04_RS02135 (OHI04_02135) rsmI 423582..424457 (+) 876 WP_039114617.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  OHI04_RS02140 (OHI04_02140) - 424534..424725 (-) 192 WP_012897234.1 hypothetical protein -
  OHI04_RS02145 (OHI04_02145) - 425754..426086 (-) 333 WP_039114618.1 hypothetical protein -
  OHI04_RS02150 (OHI04_02150) - 426086..426397 (-) 312 WP_039114619.1 hypothetical protein -
  OHI04_RS02155 (OHI04_02155) - 426646..427218 (-) 573 WP_155276098.1 hypothetical protein -
  OHI04_RS02160 (OHI04_02160) - 427232..427546 (-) 315 WP_039114623.1 hypothetical protein -
  OHI04_RS02165 (OHI04_02165) - 427666..427815 (-) 150 WP_153951467.1 hypothetical protein -

Sequence

Protein


Download         Length: 260 a.a.        Molecular weight: 29731.21 Da        Isoelectric Point: 6.3520

>NTDB_id=685573 OHI04_RS02125 WP_039114615.1 422481..423263(+) (yaaT) [Lactococcus lactis strain VHProbi V60]
MIYEIKFAHGESNVFAISDIELAPQTEVILRSDKGNFYGKIVREISEEANLEIHHTIVREVNEDDLQVIAKLEERSKQAK
DKVRQLVIEQGLEMKIIDVAYNFDQMQLFISFTAENRVDFRLLLRELATTFRIRIELRQIGPRDAAKIHGGLGPCGRPLC
CSGFVYEFPNVSIKMAKNQNLSLKQNKLNGLCGRLMCCLTYEDSFYKEAQQLFPDFGEFVTTSEGKGKVVGLNVLKNRVK
IRFGEYSKDFELAEIEVNHG

Nucleotide


Download         Length: 783 bp        

>NTDB_id=685573 OHI04_RS02125 WP_039114615.1 422481..423263(+) (yaaT) [Lactococcus lactis strain VHProbi V60]
ATGATTTATGAAATAAAATTTGCACATGGCGAATCAAATGTATTTGCAATAAGTGATATAGAACTTGCTCCACAAACAGA
AGTTATCCTTCGTTCAGATAAGGGAAACTTTTACGGAAAAATTGTACGTGAAATTTCTGAAGAAGCGAATCTTGAAATTC
ACCACACGATTGTGCGTGAAGTAAATGAGGATGATCTCCAAGTTATTGCAAAACTTGAAGAACGTTCTAAACAAGCCAAA
GATAAAGTTCGCCAACTTGTCATCGAACAAGGTTTGGAAATGAAAATTATTGATGTTGCTTATAATTTTGACCAAATGCA
ACTTTTTATTTCGTTTACGGCAGAGAATCGTGTTGATTTTCGATTGCTTTTGCGTGAGTTGGCAACAACTTTTAGAATTA
GGATTGAACTTCGCCAAATTGGGCCAAGAGATGCGGCGAAAATTCATGGGGGACTTGGACCTTGTGGGCGTCCTTTGTGC
TGTTCTGGGTTTGTTTATGAATTTCCAAATGTTTCAATCAAAATGGCCAAAAATCAAAATCTATCTTTGAAACAAAATAA
ATTGAACGGTCTTTGCGGTCGTTTGATGTGCTGTTTAACTTATGAAGATAGTTTTTATAAAGAAGCCCAACAACTTTTCC
CAGATTTTGGTGAGTTTGTAACTACCTCAGAAGGAAAAGGAAAAGTTGTTGGCTTAAATGTTTTAAAAAATAGAGTAAAA
ATCCGCTTTGGAGAATATAGCAAGGATTTTGAACTTGCAGAAATTGAGGTGAATCATGGCTGA

Domains

Predicted by InterProScan.

PSP1 C-terminal conserved region (PSP1)

(56-140)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  yaaT Bacillus subtilis subsp. subtilis str. 168

46.119

84.231

0.388