Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   sS8_RS15765 Genome accession   NZ_AP017928
Coordinates   3580294..3581640 (+) Length   448 a.a.
NCBI ID   WP_119630441.1    Uniprot ID   -
Organism   Methylocaldum marinum strain S8     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3575294..3586640
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  sS8_RS15740 (sS8_3247) - 3575403..3575966 (-) 564 WP_119628846.1 helix-turn-helix domain-containing protein -
  sS8_RS30000 (sS8_3248) - 3576021..3576281 (+) 261 WP_119630437.1 type II toxin-antitoxin system RelE/ParE family toxin -
  sS8_RS15750 (sS8_3249) sucD 3576382..3577257 (-) 876 WP_119630438.1 succinate--CoA ligase subunit alpha -
  sS8_RS15755 (sS8_3250) sucC 3577254..3578414 (-) 1161 WP_119630439.1 ADP-forming succinate--CoA ligase subunit beta -
  sS8_RS15760 (sS8_3251) - 3578678..3580297 (+) 1620 WP_170161108.1 PAS domain-containing sensor histidine kinase -
  sS8_RS15765 (sS8_3252) pilR 3580294..3581640 (+) 1347 WP_119630441.1 sigma-54 dependent transcriptional regulator Regulator
  sS8_RS15770 (sS8_3253) - 3581752..3582156 (-) 405 WP_119630442.1 hypothetical protein -
  sS8_RS15775 (sS8_3254) msbA 3582324..3584126 (-) 1803 WP_119630443.1 lipid A export permease/ATP-binding protein MsbA -
  sS8_RS15780 (sS8_3255) - 3584398..3585543 (-) 1146 WP_232020331.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 448 a.a.        Molecular weight: 49800.48 Da        Isoelectric Point: 8.3016

>NTDB_id=68529 sS8_RS15765 WP_119630441.1 3580294..3581640(+) (pilR) [Methylocaldum marinum strain S8]
MNRPSALVVDDEPAIRELLEITLARMDIEVLSAGGLRQAKDLLQNRRFDLCLTDMRLPDGDGLDLVEYIQFNHPALPVAV
ITAHGNMESAIRALKNGAFDFVSKPLDLQVLRSLINTALKLAKQEGRDRRSRHILLGDSQKMREIRSKITKLARNQAPIF
ISGESGTGKELVARLIHAMSPRSEKPFVAVNCGAIPHDLMESEFFGHKKGSFTGAVGDKQGLFQAAHGGTLFLDEVADLP
LSLQVKLLRAIQEKSVRPLGESREIPVDVRIVSATHKNLAKMVRNGDFRQDLFYRINVIEMHVPPLRERRSDIPALVDHI
LGKLTSAGDGKIELSPEALNALLSYPFPGNVRELENILERAVALCDGHRILADDLNLPETTETASPAAREERPVGEHVLS
LENYMDEVEKQAIVKALEKTRWNRTAAAKQLGVTFRALRYKLKKLGLD

Nucleotide


Download         Length: 1347 bp        

>NTDB_id=68529 sS8_RS15765 WP_119630441.1 3580294..3581640(+) (pilR) [Methylocaldum marinum strain S8]
ATGAATAGACCTTCCGCTCTCGTCGTCGATGACGAACCCGCCATCCGCGAACTGCTGGAAATTACGCTCGCGCGTATGGA
TATCGAAGTACTGTCGGCCGGAGGATTGCGACAGGCAAAGGATCTCCTGCAAAACCGGCGTTTCGATCTGTGCCTGACGG
ACATGAGACTGCCCGACGGCGACGGGCTGGACCTGGTAGAGTACATACAATTCAACCACCCGGCCCTGCCGGTCGCGGTC
ATTACCGCCCACGGCAATATGGAATCGGCGATCCGCGCCTTGAAGAACGGCGCCTTCGACTTCGTCTCCAAGCCGCTGGA
TCTCCAAGTTCTGCGGAGCCTCATCAATACTGCCCTCAAGCTCGCGAAGCAAGAGGGGCGGGATCGCCGTTCCCGCCATA
TCCTGCTCGGCGATTCGCAGAAGATGCGGGAAATCCGCTCCAAGATCACCAAGCTGGCGCGCAACCAGGCGCCTATCTTC
ATCAGCGGCGAATCGGGCACGGGCAAGGAGTTGGTTGCAAGGCTCATTCATGCCATGAGCCCGCGATCGGAAAAGCCGTT
CGTCGCCGTAAACTGCGGCGCGATACCTCACGACCTCATGGAAAGCGAATTTTTCGGCCACAAGAAAGGCAGTTTTACCG
GAGCGGTGGGGGACAAGCAGGGATTATTTCAGGCGGCTCACGGAGGCACGCTGTTTCTGGACGAAGTTGCCGACCTGCCG
CTGTCGCTACAGGTCAAACTCTTGCGCGCGATCCAGGAAAAATCGGTTCGGCCGTTGGGCGAGTCCCGAGAAATCCCGGT
GGACGTACGGATCGTGAGCGCAACCCACAAGAATCTCGCGAAAATGGTCCGAAACGGCGATTTCCGGCAAGATCTTTTTT
ACCGGATCAACGTGATCGAAATGCATGTTCCGCCCTTGCGCGAGCGCCGCAGCGATATTCCGGCCCTGGTCGATCATATC
CTCGGGAAGCTCACATCCGCAGGCGATGGCAAGATCGAACTGAGCCCGGAAGCCTTGAACGCGCTCCTGAGCTATCCGTT
TCCCGGCAACGTGCGCGAGCTGGAAAATATTCTGGAACGCGCAGTCGCACTTTGCGACGGCCATCGCATTCTGGCCGATG
ACCTGAACCTTCCTGAAACGACCGAAACCGCTTCGCCGGCGGCGAGGGAAGAGCGTCCCGTCGGGGAACACGTCCTGTCG
CTGGAAAACTATATGGACGAGGTCGAAAAGCAGGCGATCGTCAAAGCGCTGGAAAAAACCCGGTGGAACCGGACAGCGGC
CGCGAAACAGCTTGGGGTTACTTTCCGCGCCTTGCGCTACAAGCTCAAAAAGCTGGGGCTGGACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(405-445)

Sigma-54 interaction domain (Sigma54_activat)

(135-301)

Response regulator receiver domain (Response_reg)

(7-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

60.619

100

0.612
  pilR Acinetobacter baumannii strain A118

49.676

100

0.513
  luxO Vibrio cholerae strain A1552

40.045

99.777

0.4

Multiple sequence alignment