Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   JLZ98_RS19730 Genome accession   NZ_AP022811
Coordinates   3946183..3946650 (+) Length   155 a.a.
NCBI ID   WP_000339836.1    Uniprot ID   -
Organism   Escherichia coli strain JE86-ST02     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3941183..3951650
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JLZ98_RS19685 (JE86ST02C_37810) rplP 3941293..3941703 (-) 411 WP_000941212.1 50S ribosomal protein L16 -
  JLZ98_RS19690 (JE86ST02C_37820) rpsC 3941716..3942417 (-) 702 WP_000529945.1 30S ribosomal protein S3 -
  JLZ98_RS19695 (JE86ST02C_37830) rplV 3942435..3942767 (-) 333 WP_000447529.1 50S ribosomal protein L22 -
  JLZ98_RS19700 (JE86ST02C_37840) rpsS 3942782..3943060 (-) 279 WP_001138117.1 30S ribosomal protein S19 -
  JLZ98_RS19705 (JE86ST02C_37850) rplB 3943077..3943898 (-) 822 WP_000301864.1 50S ribosomal protein L2 -
  JLZ98_RS19710 (JE86ST02C_37860) rplW 3943916..3944218 (-) 303 WP_000617544.1 50S ribosomal protein L23 -
  JLZ98_RS19715 (JE86ST02C_37870) rplD 3944215..3944820 (-) 606 WP_000424395.1 50S ribosomal protein L4 -
  JLZ98_RS19720 (JE86ST02C_37880) rplC 3944831..3945460 (-) 630 WP_000579833.1 50S ribosomal protein L3 -
  JLZ98_RS19725 (JE86ST02C_37890) rpsJ 3945493..3945804 (-) 312 WP_001181004.1 30S ribosomal protein S10 -
  JLZ98_RS19730 (JE86ST02C_37900) pilD 3946183..3946650 (+) 468 WP_000339836.1 A24 family peptidase Machinery gene
  JLZ98_RS19735 (JE86ST02C_37910) bfr 3946647..3947123 (-) 477 WP_000675515.1 bacterioferritin -
  JLZ98_RS19740 (JE86ST02C_37920) bfd 3947196..3947390 (-) 195 WP_000289090.1 bacterioferritin-associated ferredoxin -
  JLZ98_RS19745 (JE86ST02C_37930) tuf 3947573..3948757 (-) 1185 WP_000031783.1 elongation factor Tu -
  JLZ98_RS19750 (JE86ST02C_37940) fusA 3948828..3950942 (-) 2115 WP_000124700.1 elongation factor G -
  JLZ98_RS19755 (JE86ST02C_37950) rpsG 3951039..3951509 (-) 471 WP_001138043.1 30S ribosomal protein S7 -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 16951.08 Da        Isoelectric Point: 8.1296

>NTDB_id=68529 JLZ98_RS19730 WP_000339836.1 3946183..3946650(+) (pilD) [Escherichia coli strain JE86-ST02]
MDANLPFLILYACLSVLLFLWDAKHGLLPDRFTCPLLWSGLLFSQVCNPDGLADALWGAIIGYGTFAVIYWGYRILRHKE
GLGYGDVKFLAALGAWHTWTFLPRLVFLAASFACGAVVVGLLMRGKESLKNPLPFGPFLAAAGFVVGWDSLLAGR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=68529 JLZ98_RS19730 WP_000339836.1 3946183..3946650(+) (pilD) [Escherichia coli strain JE86-ST02]
ATGGACGCTAACCTTCCCTTTCTGATTTTGTACGCTTGTTTATCTGTCCTACTTTTTTTATGGGATGCAAAGCATGGCTT
GTTACCTGACAGATTTACCTGCCCGTTACTCTGGTCAGGTCTTTTGTTCTCTCAGGTTTGTAATCCTGACGGTTTAGCCG
ATGCGTTATGGGGGGCGATTATTGGTTACGGCACATTCGCTGTCATTTACTGGGGGTATCGCATACTGCGTCATAAAGAA
GGATTAGGCTATGGTGATGTGAAGTTTCTCGCCGCCCTTGGTGCCTGGCATACCTGGACCTTCTTGCCACGACTGGTTTT
CCTTGCTGCCTCATTCGCTTGCGGAGCCGTAGTTGTTGGTCTGCTCATGAGAGGAAAAGAGTCATTAAAAAACCCGCTGC
CGTTTGGGCCATTTCTGGCGGCTGCGGGTTTCGTTGTAGGTTGGGATAGTTTGCTGGCAGGCCGTTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(10-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

44.8

80.645

0.361

Multiple sequence alignment