Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   OM087_RS14800 Genome accession   NZ_CP110511
Coordinates   3083855..3084445 (+) Length   196 a.a.
NCBI ID   WP_000633668.1    Uniprot ID   P0AGA7
Organism   Escherichia coli strain ws5-3     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 3078855..3089445
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OM087_RS14770 (OM087_14710) emrD 3079337..3080521 (-) 1185 WP_000828746.1 multidrug efflux MFS transporter EmrD -
  OM087_RS14775 (OM087_14715) ysdE 3080603..3080677 (+) 75 WP_213061010.1 hypothetical protein -
  OM087_RS14780 (OM087_14720) tisB 3080940..3081029 (-) 90 WP_000060506.1 type I toxin-antitoxin system toxin TisB -
  OM087_RS14785 (OM087_14725) ivbL 3081594..3081692 (+) 99 WP_001315912.1 ilvB operon leader peptide IvbL -
  OM087_RS14790 (OM087_14730) ilvB 3081798..3083486 (+) 1689 WP_115724257.1 acetolactate synthase large subunit -
  OM087_RS14795 (OM087_14735) ilvN 3083490..3083780 (+) 291 WP_001181706.1 acetolactate synthase small subunit -
  OM087_RS14800 (OM087_14740) letA 3083855..3084445 (+) 591 WP_000633668.1 transcriptional regulator UhpA Regulator
  OM087_RS14805 (OM087_14745) uhpB 3084445..3085947 (+) 1503 WP_001295243.1 signal transduction histidine-protein kinase/phosphatase UhpB -
  OM087_RS14810 (OM087_14750) uhpC 3085957..3087276 (+) 1320 WP_000936566.1 MFS transporter family glucose-6-phosphate receptor UhpC -
  OM087_RS14815 (OM087_14755) uhpT 3087414..3088805 (+) 1392 WP_000879194.1 hexose-6-phosphate:phosphate antiporter -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 20889.30 Da        Isoelectric Point: 5.9982

>NTDB_id=685010 OM087_RS14800 WP_000633668.1 3083855..3084445(+) (letA) [Escherichia coli strain ws5-3]
MITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPGRGVQVCICDISMPDISGLELLSQLPKGMATIMLSV
HDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVATGGCYLTPDIAIKLASGRQDPLTKRERQVAEKLAQGMAVKEIAA
ELGLSPKTVHVHRANLMEKLGVSNDVELARRMFDGW

Nucleotide


Download         Length: 591 bp        

>NTDB_id=685010 OM087_RS14800 WP_000633668.1 3083855..3084445(+) (letA) [Escherichia coli strain ws5-3]
ATGATCACCGTTGCCCTTATAGACGATCACCTCATCGTCCGCTCCGGCTTTGCGCAGCTGCTGGGGCTGGAACCTGATTT
GCAGGTAGTTGCCGAGTTTGGTTCGGGGCGCGAGGCGCTGGCGGGGCTGCCGGGGCGCGGTGTGCAGGTGTGTATTTGCG
ATATCTCCATGCCCGATATCTCCGGTCTGGAACTGCTAAGCCAGCTGCCGAAAGGTATGGCGACAATAATGCTCTCTGTT
CATGACAGTCCGGCGCTGGTTGAGCAGGCGCTTAACGCGGGGGCACGCGGCTTTCTCTCCAAACGCTGTAGCCCTGACGA
ACTGATTGCGGCGGTGCATACGGTTGCCACGGGCGGCTGTTATCTGACGCCGGATATTGCCATTAAACTGGCATCCGGTC
GTCAGGACCCGCTAACCAAACGCGAACGGCAGGTGGCGGAAAAACTGGCGCAAGGAATGGCGGTGAAAGAGATTGCTGCC
GAACTGGGCTTGTCGCCGAAAACGGTGCACGTCCATCGCGCCAACCTGATGGAAAAACTGGGTGTCAGTAACGACGTAGA
GCTGGCGCGCCGCATGTTTGATGGCTGGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(136-191)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AGA7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

38.5

100

0.393
  letA Legionella pneumophila strain ERS1305867

38.5

100

0.393
  degU Bacillus subtilis subsp. subtilis str. 168

33.184

100

0.378