Detailed information    

insolico Bioinformatically predicted

Overview

Name   degS   Type   Regulator
Locus tag   EFK13_RS18225 Genome accession   NZ_CP096889
Coordinates   3564388..3565545 (-) Length   385 a.a.
NCBI ID   WP_075748791.1    Uniprot ID   -
Organism   Bacillus cabrialesii strain TE3     
Function   phosphorylation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3559388..3570545
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EFK13_RS18195 (EFK13_18195) - 3559639..3560058 (-) 420 WP_129507444.1 TIGR03826 family flagellar region protein -
  EFK13_RS18200 (EFK13_18200) comFC 3560131..3560853 (-) 723 WP_129507443.1 double zinc ribbon domain-containing protein Machinery gene
  EFK13_RS18205 (EFK13_18205) comFB 3560817..3561113 (-) 297 WP_064816344.1 late competence protein ComFB -
  EFK13_RS18210 (EFK13_18210) comFA 3561182..3562567 (-) 1386 WP_129507442.1 ATP-dependent helicase ComFA Machinery gene
  EFK13_RS18215 (EFK13_18215) - 3562673..3563518 (-) 846 WP_129507441.1 DegV family protein -
  EFK13_RS18220 (EFK13_18220) degU 3563616..3564305 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  EFK13_RS18225 (EFK13_18225) degS 3564388..3565545 (-) 1158 WP_075748791.1 two-component sensor histidine kinase DegS Regulator
  EFK13_RS18230 (EFK13_18230) - 3565762..3566415 (+) 654 WP_129507440.1 YigZ family protein -
  EFK13_RS18235 (EFK13_18235) - 3566415..3567407 (+) 993 WP_129507782.1 LCP family protein -
  EFK13_RS18240 (EFK13_18240) - 3568170..3568619 (+) 450 WP_240034946.1 hypothetical protein -
  EFK13_RS18245 (EFK13_18245) - 3568668..3569123 (+) 456 WP_014481057.1 hypothetical protein -
  EFK13_RS18250 (EFK13_18250) - 3569174..3569626 (+) 453 WP_014481058.1 hypothetical protein -
  EFK13_RS18255 (EFK13_18255) - 3569702..3570481 (+) 780 WP_076457519.1 membrane-spanning protein -

Sequence

Protein


Download         Length: 385 a.a.        Molecular weight: 44929.79 Da        Isoelectric Point: 6.5309

>NTDB_id=684907 EFK13_RS18225 WP_075748791.1 3564388..3565545(-) (degS) [Bacillus cabrialesii strain TE3]
MNKTKMDSKVLDSILMKMLKTVDGSKDEVFQIGEQSRQQYEQLVEELKQIKQQVYEVIELGDKLEVQTRHARNRLSEVSR
NFHRFSEEEIRNAYEKAHKLQVELTMIQQREKQLRERRDDLERRLLGLQEIIERSESLVSQITVVLNYLNQDLREVGLLL
ADAQAKQDFGLRIIEAQEEERKRVSREIHDGPAQMLANVMMRSELIERIFRDKGAEDGFQEIKNLRQNVRNALYEVRRII
YDLRPMALDDLGLIPTLRKYLYTTEEYNGKVKIHFQCIGETEDKRLAPQFEVALFRLAQEAVSNALKHSESEEITVKVEI
TKDFVILMIKDNGKGFDLKEAKEKKNKSFGLLGMKERVDLLEGTMTIDSKIGLGTFIMIKVPLSL

Nucleotide


Download         Length: 1158 bp        

>NTDB_id=684907 EFK13_RS18225 WP_075748791.1 3564388..3565545(-) (degS) [Bacillus cabrialesii strain TE3]
ATGAATAAAACAAAGATGGATTCCAAAGTTCTGGATTCTATTTTGATGAAGATGCTGAAAACCGTTGACGGGAGCAAGGA
CGAGGTTTTTCAAATCGGGGAGCAGTCACGCCAGCAGTACGAACAGCTGGTTGAAGAACTGAAACAAATTAAACAGCAGG
TGTATGAAGTTATCGAGCTTGGCGATAAACTTGAAGTGCAGACCCGCCATGCGCGAAACCGTTTATCCGAGGTCAGCCGC
AACTTTCATAGATTCAGTGAAGAAGAAATCCGCAATGCTTACGAAAAAGCCCATAAGCTGCAGGTAGAATTAACGATGAT
CCAGCAGCGTGAGAAGCAATTGCGTGAACGCCGGGATGATTTAGAGCGAAGATTGTTGGGTCTTCAAGAAATCATTGAGC
GGTCTGAATCATTAGTAAGCCAAATTACAGTTGTGCTCAACTACTTGAATCAGGATTTGCGTGAGGTCGGACTGCTTCTT
GCCGATGCTCAGGCAAAACAGGATTTCGGCTTAAGAATTATTGAAGCGCAGGAAGAAGAGCGAAAAAGAGTCTCAAGAGA
AATCCATGACGGTCCTGCTCAAATGCTGGCAAATGTTATGATGAGATCGGAATTAATCGAGCGTATTTTCCGTGACAAGG
GCGCTGAGGACGGGTTCCAAGAAATTAAAAATCTCCGTCAAAATGTGCGAAATGCCCTTTACGAAGTGAGAAGGATTATA
TATGATTTAAGACCGATGGCCCTTGATGACCTAGGCCTGATTCCAACTTTAAGAAAATATCTATATACAACCGAGGAATA
TAACGGGAAGGTCAAAATACATTTTCAGTGCATTGGTGAAACAGAGGATAAGCGGTTAGCGCCTCAGTTTGAAGTTGCGC
TCTTCAGACTCGCACAGGAAGCTGTGTCTAATGCGCTAAAGCATTCTGAATCTGAAGAAATTACAGTCAAAGTTGAGATC
ACAAAGGATTTTGTGATTTTAATGATAAAAGATAACGGCAAAGGGTTCGACCTGAAGGAAGCGAAAGAGAAGAAAAACAA
ATCATTCGGCTTGCTGGGCATGAAAGAAAGAGTAGATTTATTGGAAGGAACCATGACAATAGATTCGAAAATAGGTCTTG
GGACATTTATTATGATCAAGGTTCCGTTATCTCTTTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(291-384)

Sensor protein DegS (DegS)

(12-170)

Histidine kinase (HisKA_3)

(180-248)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degS Bacillus subtilis subsp. subtilis str. 168

99.481

100

0.995