Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   EFK13_RS18220 Genome accession   NZ_CP096889
Coordinates   3563616..3564305 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus cabrialesii strain TE3     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3558616..3569305
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EFK13_RS18185 (EFK13_18185) flgN 3558795..3559277 (-) 483 WP_129507445.1 flagellar protein FlgN -
  EFK13_RS18190 (EFK13_18190) flgM 3559293..3559559 (-) 267 WP_103747356.1 flagellar biosynthesis anti-sigma factor FlgM -
  EFK13_RS18195 (EFK13_18195) - 3559639..3560058 (-) 420 WP_129507444.1 TIGR03826 family flagellar region protein -
  EFK13_RS18200 (EFK13_18200) comFC 3560131..3560853 (-) 723 WP_129507443.1 double zinc ribbon domain-containing protein Machinery gene
  EFK13_RS18205 (EFK13_18205) comFB 3560817..3561113 (-) 297 WP_064816344.1 late competence protein ComFB -
  EFK13_RS18210 (EFK13_18210) comFA 3561182..3562567 (-) 1386 WP_129507442.1 ATP-dependent helicase ComFA Machinery gene
  EFK13_RS18215 (EFK13_18215) - 3562673..3563518 (-) 846 WP_129507441.1 DegV family protein -
  EFK13_RS18220 (EFK13_18220) degU 3563616..3564305 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  EFK13_RS18225 (EFK13_18225) degS 3564388..3565545 (-) 1158 WP_075748791.1 two-component sensor histidine kinase DegS Regulator
  EFK13_RS18230 (EFK13_18230) - 3565762..3566415 (+) 654 WP_129507440.1 YigZ family protein -
  EFK13_RS18235 (EFK13_18235) - 3566415..3567407 (+) 993 WP_129507782.1 LCP family protein -
  EFK13_RS18240 (EFK13_18240) - 3568170..3568619 (+) 450 WP_240034946.1 hypothetical protein -
  EFK13_RS18245 (EFK13_18245) - 3568668..3569123 (+) 456 WP_014481057.1 hypothetical protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=684906 EFK13_RS18220 WP_003219701.1 3563616..3564305(-) (degU) [Bacillus cabrialesii strain TE3]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=684906 EFK13_RS18220 WP_003219701.1 3563616..3564305(-) (degU) [Bacillus cabrialesii strain TE3]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTAAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGACGACGGAGACGAAGCGGCTCGCATTGTAGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGAGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTAAAAGTAGTTGCCGAGGGCGGTTCTTACCTTCATCCGAAGGTTACCCACA
ACCTCGTTAATGAATTCCGCCGTCTTGCAACAAGCGGAGTTTCTGCACACCCTCAGCATGAGGTCTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGTATTGG
CGAATCATTGTTTATCAGTGAGAAAACCGTGAAAAACCATGTGAGCAATATTTTGCAAAAAATGAATGTGAATGACCGGA
CGCAAGCCGTTGTGGTCGCTATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1