Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   EFK13_RS18200 Genome accession   NZ_CP096889
Coordinates   3560131..3560853 (-) Length   240 a.a.
NCBI ID   WP_129507443.1    Uniprot ID   -
Organism   Bacillus cabrialesii strain TE3     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3555131..3565853
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EFK13_RS18165 (EFK13_18165) fliW 3555269..3555700 (-) 432 WP_129507449.1 flagellar assembly protein FliW -
  EFK13_RS18170 (EFK13_18170) - 3555721..3556296 (-) 576 WP_129507448.1 DUF6470 family protein -
  EFK13_RS18175 (EFK13_18175) flgL 3556343..3557239 (-) 897 WP_129507447.1 flagellar hook-associated protein FlgL -
  EFK13_RS18180 (EFK13_18180) flgK 3557253..3558776 (-) 1524 WP_129507446.1 flagellar hook-associated protein FlgK -
  EFK13_RS18185 (EFK13_18185) flgN 3558795..3559277 (-) 483 WP_129507445.1 flagellar protein FlgN -
  EFK13_RS18190 (EFK13_18190) flgM 3559293..3559559 (-) 267 WP_103747356.1 flagellar biosynthesis anti-sigma factor FlgM -
  EFK13_RS18195 (EFK13_18195) - 3559639..3560058 (-) 420 WP_129507444.1 TIGR03826 family flagellar region protein -
  EFK13_RS18200 (EFK13_18200) comFC 3560131..3560853 (-) 723 WP_129507443.1 double zinc ribbon domain-containing protein Machinery gene
  EFK13_RS18205 (EFK13_18205) comFB 3560817..3561113 (-) 297 WP_064816344.1 late competence protein ComFB -
  EFK13_RS18210 (EFK13_18210) comFA 3561182..3562567 (-) 1386 WP_129507442.1 ATP-dependent helicase ComFA Machinery gene
  EFK13_RS18215 (EFK13_18215) - 3562673..3563518 (-) 846 WP_129507441.1 DegV family protein -
  EFK13_RS18220 (EFK13_18220) degU 3563616..3564305 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  EFK13_RS18225 (EFK13_18225) degS 3564388..3565545 (-) 1158 WP_075748791.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27379.85 Da        Isoelectric Point: 10.0666

>NTDB_id=684904 EFK13_RS18200 WP_129507443.1 3560131..3560853(-) (comFC) [Bacillus cabrialesii strain TE3]
MPNKAGGGIHKLICLLCDSQFSQAVTWRALFLLKPDEKVCHSCRSKLKKITGRICTICGRPQSVHAICRDCEAWKSRVSH
SLLLRQNRSVYTYNDMMKETLSRFKFRGDAEIINAFKSDFSSTFSEVYPDKHFVLVPIPLSKEREEERGFNQAQLLAECL
NRPIRHPLIRLNNEKQSKKKKTERLLSERIFDTKNNSAIGMNIILIDDLYTTGATLHFAARCLLEKGKAASVASFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=684904 EFK13_RS18200 WP_129507443.1 3560131..3560853(-) (comFC) [Bacillus cabrialesii strain TE3]
ATGCCAAACAAAGCAGGAGGAGGCATTCATAAACTGATCTGTCTGCTATGTGATTCGCAATTTTCTCAAGCTGTTACATG
GAGAGCCCTTTTTTTATTAAAGCCTGATGAAAAGGTCTGTCATTCCTGCAGAAGCAAACTAAAGAAAATTACAGGGCGTA
TCTGCACCATATGCGGCAGACCTCAATCCGTTCATGCGATATGCAGGGATTGTGAGGCGTGGAAATCAAGGGTTAGTCAC
AGCTTGCTGCTCCGCCAAAATCGCTCAGTTTACACATATAATGATATGATGAAAGAAACGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAACGCATTTAAAAGTGATTTTTCTTCAACCTTCTCAGAGGTTTACCCCGATAAGCATTTTG
TTCTCGTTCCTATTCCGCTGAGCAAGGAACGGGAAGAAGAGCGCGGATTTAACCAGGCTCAGCTCTTGGCAGAATGCTTA
AACCGGCCTATCCGCCATCCCCTCATCCGCCTGAATAATGAGAAACAGTCTAAGAAAAAGAAAACAGAACGCCTGCTTTC
AGAGCGTATTTTTGACACAAAAAACAACTCAGCCATAGGTATGAATATCATTTTAATAGACGATCTTTATACAACAGGCG
CCACTTTGCATTTTGCAGCCCGCTGTTTATTAGAAAAAGGGAAAGCCGCTTCAGTGGCATCTTTTACCTTGATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

90.833

100

0.908