Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   EFK13_RS12510 Genome accession   NZ_CP096889
Coordinates   2469495..2469830 (+) Length   111 a.a.
NCBI ID   WP_003226345.1    Uniprot ID   A0AAE2VGU9
Organism   Bacillus cabrialesii strain TE3     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2464495..2474830
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EFK13_RS12490 (EFK13_12490) gcvT 2465083..2466171 (-) 1089 WP_129505186.1 glycine cleavage system aminomethyltransferase GcvT -
  EFK13_RS12495 (EFK13_12495) - 2466614..2468287 (+) 1674 WP_129505185.1 SNF2-related protein -
  EFK13_RS12500 (EFK13_12500) - 2468308..2469102 (+) 795 WP_129505184.1 YqhG family protein -
  EFK13_RS12505 (EFK13_12505) sinI 2469288..2469461 (+) 174 WP_064814194.1 anti-repressor SinI family protein Regulator
  EFK13_RS12510 (EFK13_12510) sinR 2469495..2469830 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  EFK13_RS12515 (EFK13_12515) tasA 2469924..2470709 (-) 786 WP_129505183.1 biofilm matrix protein TasA -
  EFK13_RS12520 (EFK13_12520) - 2470773..2471345 (-) 573 WP_129505182.1 signal peptidase I -
  EFK13_RS12525 (EFK13_12525) tapA 2471329..2472090 (-) 762 WP_129505181.1 amyloid fiber anchoring/assembly protein TapA -
  EFK13_RS12530 (EFK13_12530) - 2472364..2472690 (+) 327 WP_129505180.1 YqzG/YhdC family protein -
  EFK13_RS12535 (EFK13_12535) - 2472732..2472911 (-) 180 WP_129505179.1 YqzE family protein -
  EFK13_RS12540 (EFK13_12540) comGG 2472983..2473357 (-) 375 WP_129505178.1 competence type IV pilus minor pilin ComGG Machinery gene
  EFK13_RS12545 (EFK13_12545) comGF 2473358..2473741 (-) 384 WP_129505177.1 competence type IV pilus minor pilin ComGF Machinery gene
  EFK13_RS12550 (EFK13_12550) comGE 2473767..2474114 (-) 348 WP_129505176.1 competence type IV pilus minor pilin ComGE Machinery gene
  EFK13_RS12555 (EFK13_12555) comGD 2474098..2474529 (-) 432 WP_129505175.1 competence type IV pilus minor pilin ComGD Machinery gene
  EFK13_RS12560 (EFK13_12560) comGC 2474519..2474815 (-) 297 WP_129505174.1 comG operon protein ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12988.64 Da        Isoelectric Point: 7.2023

>NTDB_id=684879 EFK13_RS12510 WP_003226345.1 2469495..2469830(+) (sinR) [Bacillus cabrialesii strain TE3]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=684879 EFK13_RS12510 WP_003226345.1 2469495..2469830(+) (sinR) [Bacillus cabrialesii strain TE3]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

100

100

1