Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   EFK13_RS02345 Genome accession   NZ_CP096889
Coordinates   459607..460557 (+) Length   316 a.a.
NCBI ID   WP_129506702.1    Uniprot ID   -
Organism   Bacillus cabrialesii strain TE3     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 454607..465557
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EFK13_RS02320 (EFK13_02320) rapC 455996..457144 (+) 1149 WP_064814577.1 response regulator aspartate phosphatase RapC Regulator
  EFK13_RS02325 (EFK13_02325) phrC 457128..457250 (+) 123 WP_129506705.1 phosphatase RapC inhibitor PhrC Regulator
  EFK13_RS02330 (EFK13_02330) - 457349..457438 (-) 90 WP_015482794.1 YjcZ family sporulation protein -
  EFK13_RS02335 (EFK13_02335) - 457593..457703 (-) 111 WP_129506704.1 YjcZ family sporulation protein -
  EFK13_RS02340 (EFK13_02340) - 457857..459221 (-) 1365 WP_129506703.1 aspartate kinase -
  EFK13_RS02345 (EFK13_02345) ceuB 459607..460557 (+) 951 WP_129506702.1 petrobactin ABC transporter permease YclN Machinery gene
  EFK13_RS02350 (EFK13_02350) yclO 460550..461497 (+) 948 WP_129506701.1 petrobactin ABC transporter permease YclO -
  EFK13_RS02355 (EFK13_02355) yclP 461491..462249 (+) 759 WP_129506700.1 petrobactin ABC transporter ATP-binding protein YclP -
  EFK13_RS02360 (EFK13_02360) - 462271..463224 (+) 954 WP_129506699.1 siderophore ABC transporter substrate-binding protein -
  EFK13_RS02365 (EFK13_02365) - 463270..464688 (-) 1419 WP_075750111.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34890.25 Da        Isoelectric Point: 9.9364

>NTDB_id=684849 EFK13_RS02345 WP_129506702.1 459607..460557(+) (ceuB) [Bacillus cabrialesii strain TE3]
MKLRYLFILLIILAVTSVFIGVEDLSPLDLFDLSKQEASTLFASRSPRLISIVIAGLSMSICGLIMQQISRNKFVSPTTA
GTMDWARLGILISLLLFTSASPLMKMLVAFVFALAGNFLFMKILERIKFNDTIFIPLVGLMLGNIVSSIATFIAYKYDLI
QNVSSWLQGDFSLVVKGRYELLYLSIPLVIIAYVYADKFTLAGMGESFSVNLGLKYKRVVNIGLIIVSLITSLVILTVGM
LPFLGLIIPNIVSIYRGDNLKNSLPHTALLGAVFVLFCDILGRIIIFPYEISIGLMVGIIGSGIFLFMLLRRKAYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=684849 EFK13_RS02345 WP_129506702.1 459607..460557(+) (ceuB) [Bacillus cabrialesii strain TE3]
ATGAAGCTACGTTACTTATTTATTCTACTTATCATACTAGCAGTCACATCTGTATTTATCGGCGTGGAAGATCTGTCGCC
GCTTGATCTCTTCGATTTAAGCAAACAAGAGGCGTCAACGCTGTTTGCCAGCCGTTCGCCGCGATTGATCAGCATTGTCA
TCGCGGGCTTAAGCATGAGCATCTGCGGTTTGATTATGCAGCAGATCAGCAGAAACAAATTCGTGTCACCGACGACGGCG
GGCACGATGGATTGGGCGAGGCTCGGCATTTTAATATCCCTGCTGCTGTTTACATCCGCCAGTCCTTTAATGAAAATGCT
GGTTGCGTTTGTCTTTGCCCTTGCAGGAAATTTCTTGTTTATGAAAATCCTTGAGAGAATCAAGTTCAACGACACGATCT
TTATTCCGCTTGTCGGTTTAATGCTCGGGAATATCGTCAGTTCAATCGCGACATTTATCGCATATAAATATGACTTGATC
CAGAATGTGTCATCATGGCTTCAGGGAGACTTCTCTTTAGTTGTGAAAGGGAGATATGAGCTTCTTTATCTGAGTATTCC
GCTCGTTATCATTGCCTATGTGTATGCGGATAAATTCACATTGGCCGGTATGGGAGAAAGCTTTTCTGTCAACCTGGGCC
TGAAGTACAAACGGGTTGTGAACATCGGGCTCATTATCGTGTCCCTGATCACGTCTCTTGTCATTTTGACTGTCGGTATG
CTTCCATTTCTCGGTTTAATCATCCCGAATATTGTATCGATTTACAGAGGAGACAATCTGAAGAATAGCCTGCCGCACAC
TGCGCTGTTGGGAGCGGTTTTTGTGCTGTTTTGCGATATATTGGGCAGAATCATTATCTTCCCTTACGAAATCTCGATTG
GCCTGATGGTCGGAATCATCGGTAGCGGCATTTTCCTGTTTATGCTGTTAAGGAGAAAAGCATATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

52.532

100

0.525