Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   OM089_RS09710 Genome accession   NZ_CP110368
Coordinates   2066109..2066438 (+) Length   109 a.a.
NCBI ID   WP_034070202.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain 18083286     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2061109..2071438
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OM089_RS09695 - 2061724..2062686 (+) 963 WP_016253165.1 SDR family oxidoreductase -
  OM089_RS09700 - 2062686..2063723 (+) 1038 WP_003452706.1 glycosyltransferase family 4 protein -
  OM089_RS09705 - 2063921..2065918 (+) 1998 WP_003122257.1 nucleoside-diphosphate sugar epimerase/dehydratase -
  OM089_RS09710 comEA/comE1 2066109..2066438 (+) 330 WP_034070202.1 ComEA family DNA-binding protein Machinery gene
  OM089_RS09720 - 2066655..2067851 (-) 1197 WP_003104588.1 amino acid aminotransferase -
  OM089_RS09725 uvrB 2068039..2070051 (+) 2013 WP_003104590.1 excinuclease ABC subunit UvrB Machinery gene

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11397.40 Da        Isoelectric Point: 8.0459

>NTDB_id=684807 OM089_RS09710 WP_034070202.1 2066109..2066438(+) (comEA/comE1) [Pseudomonas aeruginosa strain 18083286]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLAAMTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRSRIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=684807 OM089_RS09710 WP_034070202.1 2066109..2066438(+) (comEA/comE1) [Pseudomonas aeruginosa strain 18083286]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAACCCGCTGGCCGCAATGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGACG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAAGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGTCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385
  comEA Vibrio cholerae C6706

37.168

100

0.385
  comEA Vibrio cholerae strain A1552

37.168

100

0.385