Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY2   Type   Machinery gene
Locus tag   M2A29_RS01595 Genome accession   NZ_CP096812
Coordinates   342895..343377 (+) Length   160 a.a.
NCBI ID   WP_001046418.1    Uniprot ID   A0A0J8UYN7
Organism   Acinetobacter baumannii strain 51248     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 337895..348377
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M2A29_RS01585 (M2A29_01585) pilX 338198..339016 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  M2A29_RS01590 (M2A29_01590) pilY1 339028..342882 (+) 3855 WP_213064315.1 PilC/PilY family type IV pilus protein Machinery gene
  M2A29_RS01595 (M2A29_01595) pilY2 342895..343377 (+) 483 WP_001046418.1 type IV pilin protein Machinery gene
  M2A29_RS01600 (M2A29_01600) pilE 343374..343799 (+) 426 WP_000788339.1 type IV pilin protein Machinery gene
  M2A29_RS01605 (M2A29_01605) rpsP 343946..344197 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  M2A29_RS01610 (M2A29_01610) rimM 344217..344765 (+) 549 WP_000189236.1 ribosome maturation factor RimM -
  M2A29_RS01615 (M2A29_01615) trmD 344811..345551 (+) 741 WP_000464598.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  M2A29_RS01620 (M2A29_01620) rplS 345759..346127 (+) 369 WP_000014562.1 50S ribosomal protein L19 -
  M2A29_RS01625 (M2A29_01625) - 346179..347120 (-) 942 WP_272326251.1 triacylglycerol lipase -
  M2A29_RS01630 (M2A29_01630) - 347235..348269 (-) 1035 WP_005122456.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17533.80 Da        Isoelectric Point: 8.4817

>NTDB_id=684303 M2A29_RS01595 WP_001046418.1 342895..343377(+) (pilY2) [Acinetobacter baumannii strain 51248]
MNKYSILRFNQGVTLIELMVVIVIVAIFASIAIPSYQSYSRRATASAAKSEILKLAEQLEQHKSRNFTYRGFTTTSITLP
RGGYTIQITDDTTTGNLLTNAAANGQTWVIKATTTDSRNFNFIAKNSGLRCQSLTVTAVDNDCGGTTTCNTCETNSEVWQ

Nucleotide


Download         Length: 483 bp        

>NTDB_id=684303 M2A29_RS01595 WP_001046418.1 342895..343377(+) (pilY2) [Acinetobacter baumannii strain 51248]
ATGAATAAGTACTCTATTCTACGGTTCAATCAAGGGGTTACCTTGATTGAGCTTATGGTCGTGATTGTTATCGTTGCTAT
TTTTGCTTCAATTGCTATCCCCTCATATCAAAGTTATAGCCGTAGAGCTACTGCATCTGCGGCTAAAAGTGAAATTTTGA
AATTAGCTGAACAATTGGAACAGCATAAATCAAGAAATTTTACTTATAGGGGGTTTACCACAACCTCTATAACCCTACCT
CGCGGGGGATATACGATTCAGATTACTGATGATACGACGACAGGAAATTTATTGACGAATGCTGCTGCAAATGGGCAAAC
ATGGGTCATTAAAGCGACAACTACAGATTCAAGAAACTTTAATTTTATTGCTAAGAATTCAGGTTTGCGTTGTCAAAGTT
TAACAGTTACAGCCGTTGATAATGATTGTGGTGGTACGACTACTTGTAATACATGTGAAACGAACAGTGAGGTTTGGCAG
TGA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(34-115)

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0J8UYN7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY2 Acinetobacter baumannii D1279779

95.625

100

0.956
  comE Acinetobacter baylyi ADP1

41.279

100

0.444