Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   M2A29_RS01585 Genome accession   NZ_CP096812
Coordinates   338198..339016 (+) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain 51248     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 333198..344016
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M2A29_RS01550 (M2A29_01550) - 333780..333910 (-) 131 Protein_295 hypothetical protein -
  M2A29_RS01555 (M2A29_01555) rpoZ 333949..334227 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  M2A29_RS01560 (M2A29_01560) gmk 334300..334929 (-) 630 WP_000015937.1 guanylate kinase -
  M2A29_RS01565 (M2A29_01565) ispH 335052..336002 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  M2A29_RS01570 (M2A29_01570) fimU 336172..336645 (+) 474 WP_001214064.1 GspH/FimT family pseudopilin Machinery gene
  M2A29_RS01575 (M2A29_01575) pilV 336639..337199 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  M2A29_RS01580 (M2A29_01580) pilW 337200..338201 (+) 1002 WP_000079197.1 PilW family protein Machinery gene
  M2A29_RS01585 (M2A29_01585) pilX 338198..339016 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  M2A29_RS01590 (M2A29_01590) pilY1 339028..342882 (+) 3855 WP_213064315.1 PilC/PilY family type IV pilus protein Machinery gene
  M2A29_RS01595 (M2A29_01595) pilY2 342895..343377 (+) 483 WP_001046418.1 type IV pilin protein Machinery gene
  M2A29_RS01600 (M2A29_01600) pilE 343374..343799 (+) 426 WP_000788339.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=684301 M2A29_RS01585 WP_000149374.1 338198..339016(+) (pilX) [Acinetobacter baumannii strain 51248]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=684301 M2A29_RS01585 WP_000149374.1 338198..339016(+) (pilX) [Acinetobacter baumannii strain 51248]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCCAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATTCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCGACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993