Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   M2A29_RS01570 Genome accession   NZ_CP096812
Coordinates   336172..336645 (+) Length   157 a.a.
NCBI ID   WP_001214064.1    Uniprot ID   A0A0J8UYN3
Organism   Acinetobacter baumannii strain 51248     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 331172..341645
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M2A29_RS01545 (M2A29_01545) - 331635..333740 (-) 2106 WP_001117590.1 HD domain-containing protein -
  M2A29_RS01550 (M2A29_01550) - 333780..333910 (-) 131 Protein_295 hypothetical protein -
  M2A29_RS01555 (M2A29_01555) rpoZ 333949..334227 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  M2A29_RS01560 (M2A29_01560) gmk 334300..334929 (-) 630 WP_000015937.1 guanylate kinase -
  M2A29_RS01565 (M2A29_01565) ispH 335052..336002 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  M2A29_RS01570 (M2A29_01570) fimU 336172..336645 (+) 474 WP_001214064.1 GspH/FimT family pseudopilin Machinery gene
  M2A29_RS01575 (M2A29_01575) pilV 336639..337199 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  M2A29_RS01580 (M2A29_01580) pilW 337200..338201 (+) 1002 WP_000079197.1 PilW family protein Machinery gene
  M2A29_RS01585 (M2A29_01585) pilX 338198..339016 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16850.43 Da        Isoelectric Point: 8.5355

>NTDB_id=684298 M2A29_RS01570 WP_001214064.1 336172..336645(+) (fimU) [Acinetobacter baumannii strain 51248]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILTKLGTLVFKAEENC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=684298 M2A29_RS01570 WP_001214064.1 336172..336645(+) (fimU) [Acinetobacter baumannii strain 51248]
ATGAGGGGAATTATTCCACAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCAGTCATGGCTATTATTGCACT
GATGGCTGCGCCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGTCGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTACCACTTTAGCTTTTAACGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTCATTATTTTGACCAAGCTTGGCACTTTAGTTTTTAAGGCCGAGGAGAATTGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-143)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0J8UYN3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

99.363

100

0.994