Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   M2A29_RS01455 Genome accession   NZ_CP096812
Coordinates   310645..311385 (+) Length   246 a.a.
NCBI ID   WP_284625852.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 51248     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 305645..316385
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M2A29_RS01440 (M2A29_01440) ponA 306232..308787 (-) 2556 WP_000736677.1 penicillin-binding protein PBP1a -
  M2A29_RS01445 (M2A29_01445) pilM 308949..310007 (+) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  M2A29_RS01450 (M2A29_01450) pilN 310007..310648 (+) 642 WP_284625851.1 PilN domain-containing protein Machinery gene
  M2A29_RS01455 (M2A29_01455) pilO 310645..311385 (+) 741 WP_284625852.1 type 4a pilus biogenesis protein PilO Machinery gene
  M2A29_RS01460 (M2A29_01460) pilP 311396..311923 (+) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  M2A29_RS01465 (M2A29_01465) pilQ 311986..314151 (+) 2166 WP_078202459.1 type IV pilus secretin PilQ family protein Machinery gene
  M2A29_RS01470 (M2A29_01470) aroK 314163..314732 (+) 570 WP_000643712.1 shikimate kinase AroK -
  M2A29_RS01475 (M2A29_01475) aroB 314761..315843 (+) 1083 WP_001193995.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27813.52 Da        Isoelectric Point: 4.7234

>NTDB_id=684294 M2A29_RS01455 WP_284625852.1 310645..311385(+) (pilO) [Acinetobacter baumannii strain 51248]
MSQDELQELSLEQLSAKKKKFNLDKFLQQFNTLDMNNYGSWPISVKITCWIFIFFAVLALGYFIVIQPKLQAIDNAQAQE
SNLLNEFREKDSKLRNLQQYQVQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
IAIEATGDYHAFGAFVSSIAALPRIVTLHDFTVDVSPAKDNKSDIPVLNYSIKAKTYRYVGATDTSEQTGNPPAASASTN
TTVQPK

Nucleotide


Download         Length: 741 bp        

>NTDB_id=684294 M2A29_RS01455 WP_284625852.1 310645..311385(+) (pilO) [Acinetobacter baumannii strain 51248]
ATGAGTCAAGACGAACTTCAAGAATTGTCATTAGAACAATTATCTGCAAAGAAAAAGAAATTTAATCTCGATAAATTCCT
TCAGCAATTTAATACGCTGGATATGAACAACTATGGTAGTTGGCCAATATCTGTAAAAATTACGTGTTGGATTTTTATTT
TCTTTGCTGTGTTAGCTTTGGGGTATTTCATTGTTATTCAACCGAAATTACAAGCTATTGATAATGCTCAAGCTCAGGAA
AGCAATTTATTAAACGAATTTCGTGAAAAAGACTCGAAATTACGTAACCTGCAACAGTATCAGGTACAGCTTCAAGAGAT
GCAGGCAAATTTCAACCAGCAACTAGAGCAGTTGCCAAAAGAAACTGAGATTCCGAGTTTAGTTGAAGATATCAACTTAA
CAGGAGTGAACTCTGGATTGAAATTTAAAAATATTCGCTTAGAAGATGAAGTAAAGCAGGAAATTTTTATTGAGCAACCA
ATTGCCATAGAAGCGACTGGGGACTATCACGCATTTGGAGCTTTTGTAAGTAGTATCGCTGCTTTGCCTCGTATTGTAAC
CTTGCACGATTTTACTGTTGATGTATCGCCAGCTAAAGATAACAAGTCTGATATTCCTGTGCTGAACTATTCCATTAAAG
CAAAAACATACCGATACGTAGGGGCAACAGATACATCGGAGCAAACAGGCAACCCTCCAGCAGCATCTGCTTCAACGAAC
ACTACTGTTCAGCCGAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

98.78

100

0.988
  comO Acinetobacter baylyi ADP1

69.835

98.374

0.687