Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   PALA44_RS18285 Genome accession   NZ_CP110350
Coordinates   3823707..3824204 (-) Length   165 a.a.
NCBI ID   WP_033988849.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain PALA44     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3818707..3829204
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PALA44_RS18250 (PALA44_03606) - 3819243..3820331 (-) 1089 WP_033988857.1 DUF3396 domain-containing protein -
  PALA44_RS18255 (PALA44_03607) - 3820349..3821056 (-) 708 WP_033988855.1 VRR-NUC domain-containing protein -
  PALA44_RS18260 - 3821053..3821571 (-) 519 WP_033988853.1 PAAR domain-containing protein -
  PALA44_RS18265 (PALA44_03608) - 3821839..3822447 (-) 609 WP_049310740.1 hypothetical protein -
  PALA44_RS18270 (PALA44_03609) - 3822499..3822843 (-) 345 WP_033939301.1 hypothetical protein -
  PALA44_RS18275 (PALA44_03610) - 3822992..3823339 (+) 348 WP_033988851.1 helix-turn-helix domain-containing protein -
  PALA44_RS18280 (PALA44_03611) - 3823314..3823664 (-) 351 WP_071534401.1 hypothetical protein -
  PALA44_RS18285 (PALA44_03612) radC 3823707..3824204 (-) 498 WP_033988849.1 RadC family protein Machinery gene
  PALA44_RS18290 (PALA44_03613) - 3824246..3825142 (-) 897 WP_033988847.1 hypothetical protein -
  PALA44_RS18295 (PALA44_03614) - 3825232..3826236 (-) 1005 WP_033988845.1 YqaJ viral recombinase family protein -
  PALA44_RS18300 (PALA44_03615) - 3826323..3827291 (-) 969 WP_033988844.1 DUF932 domain-containing protein -
  PALA44_RS18305 (PALA44_03616) - 3827384..3827710 (-) 327 WP_071534400.1 hypothetical protein -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18060.78 Da        Isoelectric Point: 6.9239

>NTDB_id=684295 PALA44_RS18285 WP_033988849.1 3823707..3824204(-) (radC) [Pseudomonas aeruginosa strain PALA44]
MKFHKLRAGEVAGSYLVDSPVSENDILRMAQQLATQRLSKGRALTDPHKVREHLQVLLQDLPHEVFAVLLLDSKHRVISF
EELFRGTLDAASVYPREVIKTVLAQNAAAVILVHNHPSGDPSPSQADIRLTQTLKNALAMVGTTTLDHFIVGSEGIVSLA
EQGLL

Nucleotide


Download         Length: 498 bp        

>NTDB_id=684295 PALA44_RS18285 WP_033988849.1 3823707..3824204(-) (radC) [Pseudomonas aeruginosa strain PALA44]
ATGAAATTTCACAAGCTCAGAGCCGGTGAGGTCGCCGGCAGTTACCTGGTGGACTCGCCCGTTAGCGAAAACGACATCCT
GCGCATGGCCCAACAGCTAGCCACTCAGCGACTGAGTAAAGGCCGCGCGCTGACTGATCCACACAAAGTCAGAGAGCATC
TACAGGTGTTGCTGCAGGATCTGCCACATGAAGTCTTCGCGGTGTTGCTGCTCGATAGCAAACACCGCGTGATCAGTTTC
GAGGAGCTGTTTCGCGGCACCCTCGACGCAGCCAGCGTCTATCCGCGTGAAGTGATCAAAACAGTGCTCGCGCAAAACGC
CGCGGCTGTGATCCTGGTGCACAACCATCCTTCCGGCGATCCCTCTCCCAGCCAGGCAGATATACGCCTGACGCAAACAC
TCAAAAACGCCCTGGCCATGGTCGGCACCACCACGTTGGATCACTTCATCGTGGGGTCAGAAGGCATCGTGTCGCTGGCT
GAACAGGGCTTGCTCTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(45-164)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

42.857

84.848

0.364