Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   CTB89_RS08405 Genome accession   NZ_AP017891
Coordinates   1692978..1693424 (-) Length   148 a.a.
NCBI ID   WP_001796473.1    Uniprot ID   -
Organism   Staphylococcus aureus strain GN3     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1687978..1698424
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CTB89_RS08375 gcvPA 1688904..1690250 (-) 1347 WP_020977293.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  CTB89_RS08380 gcvT 1690270..1691361 (-) 1092 WP_020977294.1 glycine cleavage system aminomethyltransferase GcvT -
  CTB89_RS08385 - 1691520..1692044 (-) 525 WP_020977295.1 shikimate kinase -
  CTB89_RS08390 - 1692034..1692180 (-) 147 WP_001789879.1 hypothetical protein -
  CTB89_RS08395 comGF 1692277..1692774 (-) 498 WP_020977296.1 competence type IV pilus minor pilin ComGF Machinery gene
  CTB89_RS08400 comGE 1692692..1692991 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  CTB89_RS08405 comGD 1692978..1693424 (-) 447 WP_001796473.1 competence type IV pilus minor pilin ComGD Machinery gene
  CTB89_RS08410 comGC 1693402..1693713 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  CTB89_RS08415 comGB 1693727..1694797 (-) 1071 WP_000776407.1 competence type IV pilus assembly protein ComGB Machinery gene
  CTB89_RS08420 comGA 1694769..1695743 (-) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  CTB89_RS08425 - 1695795..1696418 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  CTB89_RS08430 - 1696415..1696744 (-) 330 WP_020977297.1 MTH1187 family thiamine-binding protein -
  CTB89_RS08435 - 1696744..1697730 (-) 987 WP_000161315.1 ROK family glucokinase -
  CTB89_RS08440 - 1697727..1697930 (-) 204 WP_000087561.1 YqgQ family protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17131.31 Da        Isoelectric Point: 10.3312

>NTDB_id=68414 CTB89_RS08405 WP_001796473.1 1692978..1693424(-) (comGD) [Staphylococcus aureus strain GN3]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISLITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=68414 CTB89_RS08405 WP_001796473.1 1692978..1693424(-) (comGD) [Staphylococcus aureus strain GN3]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTTTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTCTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTGATAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

99.324

100

0.993
  comGD Staphylococcus aureus N315

99.324

100

0.993

Multiple sequence alignment