Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   SNAG_RS08105 Genome accession   NZ_AP017652
Coordinates   1576460..1578442 (-) Length   660 a.a.
NCBI ID   WP_096408291.1    Uniprot ID   -
Organism   Streptococcus sp. NPS 308     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1571460..1583442
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SNAG_RS08105 (SNAG_1588) amiA3 1576460..1578442 (-) 1983 WP_096408291.1 peptide ABC transporter substrate-binding protein Regulator
  SNAG_RS08110 (SNAG_1589) rfbD 1578693..1579547 (+) 855 WP_096408293.1 dTDP-4-dehydrorhamnose reductase -
  SNAG_RS08115 (SNAG_1590) - 1579608..1579832 (-) 225 Protein_1519 dTDP-glucose 4,6-dehydratase -
  SNAG_RS08120 (SNAG_1591) - 1579951..1581003 (-) 1053 WP_096408296.1 galactofuranosyltransferase -
  SNAG_RS08125 (SNAG_1592) glf 1581031..1582134 (-) 1104 WP_096408298.1 UDP-galactopyranose mutase -

Sequence

Protein


Download         Length: 660 a.a.        Molecular weight: 73105.47 Da        Isoelectric Point: 4.6053

>NTDB_id=68365 SNAG_RS08105 WP_096408291.1 1576460..1578442(-) (amiA3) [Streptococcus sp. NPS 308]
MKSSKIFALAGVTLLAAATLAACSGSGSSAKSEKTFSYIYETDPDNLNYLTTGKAATANITSNVVDGLLENDRYGNFVPS
MAEDWSVSKDGLTYTYTIRKDAKWYTSEGEEYATVKAQDFVTGLKYAADKKSDGLYLVQESIKGLDAYVKGEIKDFAEVG
IKALDDHTVQYTLNKPESFWNSKTTMGVMAPVNEEFLNSKGDDFAKGTDPGSILYNGPFLLKSIVAKSSVEFEKNPNYWD
KDNVHLDKVKLSYWDGQDTNKPTEAFKDGSFTMARLFPTSASYPETEKEYKDNIVYTQQDSSTFLVGINIDRQSYQYSSK
TTDEQKNSTKKALLNKDFRQALAFGFDRTAYASQVNGASGATKLLRNLFVPPAFVQADGKNFGEMVKEKLVTYGDEWSNV
NLADAQDGLYNPDKAKAEFAKAKAALQAEGVQFPIHLDMPVDQTNTTKVQRVQSFKQSLEATLGAENVVVDIQQLQKDDV
LNITYFAETAAGEDWDISDNVGWSPDFADPSTYLDIIKPSVGENTKTYLGFDSGTNNAAAKQVGLEDYEKMVVEAGEEVN
DVSKRYEKYAAAQAWLTDSALLIPTTSQTGRPMLSKMVPFTLPFAYSGNKGMSEALLYKYLDVQDKAVTADEYQKAQEKW
LKEKEESNKKAQEDLANHVK

Nucleotide


Download         Length: 1983 bp        

>NTDB_id=68365 SNAG_RS08105 WP_096408291.1 1576460..1578442(-) (amiA3) [Streptococcus sp. NPS 308]
ATGAAAAGTTCAAAAATATTTGCTCTTGCGGGTGTAACCTTATTGGCGGCTGCGACTCTAGCTGCTTGCTCTGGATCAGG
ATCGAGTGCAAAATCTGAGAAAACATTCTCATATATCTATGAAACAGACCCTGACAACCTCAACTATTTGACAACTGGTA
AGGCGGCTACTGCAAATATTACCAGTAACGTTGTTGATGGCTTGCTAGAAAATGACCGCTATGGTAACTTTGTACCGTCA
ATGGCTGAGGATTGGTCAGTATCCAAGGATGGATTGACTTATACTTATACCATTCGGAAGGATGCAAAATGGTATACTTC
TGAAGGAGAAGAGTATGCAACGGTTAAAGCGCAAGACTTTGTAACTGGTCTAAAATATGCTGCTGATAAAAAATCAGATG
GTCTTTATCTTGTTCAGGAATCAATCAAAGGATTGGATGCCTATGTGAAAGGAGAAATCAAAGATTTCGCTGAAGTAGGT
ATTAAGGCTCTTGATGACCACACTGTTCAGTACACCTTGAACAAGCCAGAAAGCTTCTGGAATTCTAAGACAACGATGGG
GGTAATGGCTCCAGTTAATGAAGAGTTCTTAAACTCTAAAGGGGATGATTTCGCTAAAGGAACAGATCCAGGTAGCATCC
TATATAATGGCCCATTCTTGCTAAAATCTATCGTAGCCAAATCTTCTGTTGAGTTTGAAAAAAATCCAAACTATTGGGAT
AAGGACAATGTTCATCTTGATAAAGTGAAATTGTCCTACTGGGATGGTCAAGATACCAACAAACCAACCGAAGCCTTCAA
AGATGGCAGCTTTACAATGGCCCGTCTCTTCCCAACAAGCGCTAGCTACCCAGAGACTGAAAAAGAATATAAAGACAATA
TTGTTTATACACAACAAGACTCATCAACTTTCTTAGTTGGTATCAATATCGATCGTCAGTCTTATCAATACTCATCTAAA
ACAACTGATGAACAAAAAAATTCTACCAAGAAAGCTCTTCTAAACAAAGACTTCCGTCAAGCACTTGCCTTTGGTTTTGA
TAGAACAGCCTATGCTTCTCAAGTCAATGGTGCAAGTGGTGCTACTAAGCTACTTCGTAACTTGTTTGTACCGCCAGCAT
TCGTGCAGGCAGATGGAAAGAACTTTGGCGAAATGGTTAAAGAAAAATTGGTGACTTATGGTGACGAGTGGAGCAACGTG
AACTTGGCCGATGCTCAAGATGGACTCTATAACCCAGATAAGGCCAAAGCAGAATTTGCCAAAGCTAAGGCAGCTCTTCA
AGCTGAAGGTGTGCAATTCCCAATTCACTTGGATATGCCTGTAGACCAAACCAATACAACAAAAGTTCAACGTGTTCAAT
CCTTCAAACAATCGCTTGAAGCTACTCTAGGGGCAGAGAACGTCGTTGTCGATATCCAACAACTTCAAAAAGATGATGTC
TTGAATATCACTTACTTTGCTGAAACAGCTGCTGGAGAAGACTGGGATATCTCAGATAACGTTGGATGGTCCCCAGACTT
TGCAGACCCATCTACATACCTAGATATCATCAAGCCATCTGTAGGGGAAAATACAAAGACTTACCTAGGATTTGACTCTG
GAACAAACAACGCTGCAGCGAAGCAAGTTGGTTTGGAAGACTACGAAAAAATGGTTGTTGAAGCTGGTGAAGAAGTGAAT
GACGTTTCAAAACGTTATGAAAAATATGCTGCTGCCCAAGCTTGGTTGACAGACAGTGCCTTGCTCATCCCAACAACTTC
CCAAACTGGTCGTCCAATGTTGTCTAAGATGGTTCCATTTACACTTCCGTTTGCATACTCTGGTAACAAGGGTATGAGCG
AAGCCCTCTTGTATAAATACCTAGATGTACAAGATAAAGCAGTAACAGCAGATGAATACCAAAAAGCTCAAGAAAAATGG
TTGAAAGAAAAAGAAGAGTCAAATAAAAAGGCTCAAGAAGATCTCGCAAACCATGTGAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(77-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

59.607

100

0.597
  amiA3 Streptococcus thermophilus LMG 18311

58.85

100

0.589
  amiA Streptococcus salivarius strain HSISS4

58.699

100

0.588

Multiple sequence alignment