Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   OFY13_RS10385 Genome accession   NZ_CP110188
Coordinates   2299034..2299759 (+) Length   241 a.a.
NCBI ID   WP_000877198.1    Uniprot ID   Q9KU21
Organism   Vibrio cholerae strain E1     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2294034..2304759
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OFY13_RS10370 (OFY13_10370) clpC 2294482..2297055 (-) 2574 WP_001235058.1 ATP-dependent chaperone ClpB Regulator
  OFY13_RS10375 (OFY13_10375) pgeF 2297180..2297902 (-) 723 WP_000602849.1 peptidoglycan editing factor PgeF -
  OFY13_RS10380 (OFY13_10380) rluD 2297905..2298879 (-) 975 WP_000941106.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  OFY13_RS10385 (OFY13_10385) comL 2299034..2299759 (+) 726 WP_000877198.1 outer membrane protein assembly factor BamD Machinery gene
  OFY13_RS10390 (OFY13_10390) hpf 2300161..2300487 (+) 327 WP_000700176.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  OFY13_RS10395 (OFY13_10395) pheA 2300726..2301901 (+) 1176 WP_000130282.1 prephenate dehydratase -
  OFY13_RS10400 (OFY13_10400) - 2302083..2303117 (+) 1035 WP_000595742.1 spermidine/putrescine ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27875.68 Da        Isoelectric Point: 5.1660

>NTDB_id=683440 OFY13_RS10385 WP_000877198.1 2299034..2299759(+) (comL) [Vibrio cholerae strain E1]
MKYQTLSGLLALSLLFGCSSSPDVVPDVPPSQLYSEAQTALQSGTWLTAIEKLEALDSRYPFGAYSEQVQLDLIYAYYKN
DDLALGLATIERFTRLNPTHEKMDWVLYMRGLTHMAQDRNFMHDLFNIDRRDRDPEPVKAAFADFKKLLQRYPNSPYAED
AQRRMFALKNRLAEYDLATADFYLRREAWIAAINRTQELQKTYPDTEAARKSLEIQLEAYQQLGLTDAIERTKQLMQLNP
L

Nucleotide


Download         Length: 726 bp        

>NTDB_id=683440 OFY13_RS10385 WP_000877198.1 2299034..2299759(+) (comL) [Vibrio cholerae strain E1]
ATGAAATACCAGACTTTATCAGGCCTACTCGCGTTATCCCTGTTATTTGGTTGCTCTAGCAGCCCAGATGTGGTGCCAGA
TGTACCGCCATCACAGCTGTACTCTGAAGCGCAAACCGCTCTACAAAGCGGAACGTGGTTAACCGCTATAGAAAAACTCG
AAGCGCTCGATTCACGCTATCCATTTGGTGCTTATTCAGAGCAAGTACAGCTCGATCTGATTTATGCCTACTACAAAAAT
GATGATCTGGCCCTTGGCCTCGCGACCATCGAACGTTTTACACGCCTTAATCCAACCCATGAAAAAATGGATTGGGTACT
CTACATGCGCGGTTTGACGCACATGGCGCAAGATCGCAACTTCATGCATGACCTGTTTAATATCGATCGCCGTGACCGCG
ATCCTGAACCCGTGAAAGCAGCCTTTGCGGATTTTAAGAAACTGCTCCAGCGTTACCCAAACAGCCCATACGCAGAAGAT
GCGCAGCGTCGAATGTTTGCGCTCAAGAACCGTTTAGCGGAATACGATTTAGCGACCGCAGATTTCTACCTGCGCCGTGA
AGCATGGATTGCAGCGATTAATCGCACTCAAGAATTACAAAAAACCTATCCAGATACCGAAGCGGCACGTAAATCCTTAG
AAATCCAACTCGAGGCTTATCAGCAGCTTGGTTTAACCGACGCGATAGAGCGAACTAAGCAGTTAATGCAGCTTAACCCT
TTATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(26-235)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9KU21

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.589

100

0.386
  comL Neisseria gonorrhoeae MS11

37.759

100

0.378