Detailed information NTG0683439

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: OFY13_RS10370
• Genome accession: NZ_CP110188
• Coordinates: 2294482..2297055 (-)
• Length: 857 a.a.
• NCBI ID: WP_001235058.1
• Uniprot ID: A0AAU8WIQ1
• Organism: Vibrio cholerae strain E1
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 2289482..2302055

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OFY13_RS10370 (OFY13_10370)	clpC	2294482..2297055 (-)	2574	WP_001235058.1	ATP-dependent chaperone ClpB	Regulator
OFY13_RS10375 (OFY13_10375)	pgeF	2297180..2297902 (-)	723	WP_000602849.1	peptidoglycan editing factor PgeF	-
OFY13_RS10380 (OFY13_10380)	rluD	2297905..2298879 (-)	975	WP_000941106.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
OFY13_RS10385 (OFY13_10385)	comL	2299034..2299759 (+)	726	WP_000877198.1	outer membrane protein assembly factor BamD	Machinery gene
OFY13_RS10390 (OFY13_10390)	hpf	2300161..2300487 (+)	327	WP_000700176.1	ribosome hibernation-promoting factor, HPF/YfiA family	-
OFY13_RS10395 (OFY13_10395)	pheA	2300726..2301901 (+)	1176	WP_000130282.1	prephenate dehydratase	-

Sequence

Protein

• Length: 857 a.a.
• Molecular weight: 95791.72 Da
• Isoelectric Point: 5.3019

>NTDB_id=683439 OFY13_RS10370 WP_001235058.1 2294482..2297055(-) (clpC) [Vibrio cholerae strain E1]
MRLDRFTSKFQIAISDAQSLALGRDHQYIEPVHLMVALLDQNGSPIRPLLTMLNVDVMQLRSKLGEMLDRLPKVSGIGGD
VQLSSALGSLFNLCDKVAQKRQDAYISSEIYLLAALEDKGPLGTLLKEFGLTEKKVSDAIEKIRGGQKVNDPNAEELRQA
LEKFTIDLTERAEQGKLDPVIGRDDEIRRTIQVLQRRTKNNPVIIGEPGVGKTAIVEGLAQRIINNEVPEGLRGRRVLSL
DMGALVAGAKYRGEFEERLKSVLNELAKEEGNIILFIDELHTMVGAGKGEGSMDAGNMLKPALARGELHCVGATTLDEYR
QYIEKDPALERRFQKVLVDEPTVEDTIAILRGLKERYELHHHVEITDPAIVAAASLSHRYISDRQLPDKAIDLIDEAASS
IRMQIDSKPEALDKLERKIIQLKIEQQALSNEHDEASEKRLAILNEELQEKERDYAELEEVWKAEKAALSGTQHIKAALE
QARMDLEVARRAGDLNRMSELQYGRIPELEKQLDLAAQAEMQEMTLLRNKVTDAEIAEVLSKQTGIPVSKMLEAEKEKLL
RMEEVLHKRVIGQKEAVEVVANAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKTLANFLFDSEDAMVRVDMSEFMEK
HSVARLVGAPPGYVGYEEGGYLTEAVRRKPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNL
GSSRIQENFARLDYQGIKEQVMDVVSKHFRPEFLNRVDESVVFHPLGQEHIKSIASIQLARLRQRLAERDYQLEVDDEAL
DLIAHVGFDPVYGARPLKRAIQQNVENPLAKSILAGKFLPGSPILLSVKDGNIFASQ

Nucleotide

• Length: 2574 bp

>NTDB_id=683439 OFY13_RS10370 WP_001235058.1 2294482..2297055(-) (clpC) [Vibrio cholerae strain E1]
ATGCGTCTTGACAGATTTACGAGCAAATTTCAGATCGCGATTTCCGATGCCCAGTCATTAGCGCTCGGCCGTGATCATCA
ATATATCGAACCTGTGCACCTGATGGTGGCTCTGCTGGATCAAAACGGCAGCCCGATCCGCCCATTACTCACCATGCTTA
ATGTGGATGTGATGCAACTGCGCTCCAAACTTGGCGAAATGCTCGATCGTTTACCCAAAGTCAGTGGTATTGGTGGTGAT
GTACAGCTCTCTTCGGCGCTTGGCTCGCTGTTTAATCTGTGTGATAAGGTTGCGCAAAAGCGTCAAGATGCCTACATCTC
CTCTGAAATTTATCTCCTCGCCGCTTTGGAAGATAAAGGTCCACTTGGAACCTTGCTCAAAGAGTTCGGGCTGACCGAGA
AAAAAGTCTCTGATGCAATTGAAAAAATTCGTGGAGGCCAGAAGGTCAATGACCCGAATGCGGAAGAGCTGCGTCAAGCG
TTGGAAAAATTCACCATCGATCTCACTGAACGCGCTGAGCAGGGCAAACTCGATCCTGTGATCGGTCGTGATGATGAAAT
TCGCCGCACCATTCAAGTGCTGCAGCGTCGTACCAAAAACAACCCAGTGATCATCGGTGAACCCGGTGTGGGTAAAACTG
CGATTGTGGAAGGCTTGGCGCAGCGCATCATTAATAATGAAGTACCAGAAGGCCTGCGTGGACGCCGCGTATTGTCTTTA
GATATGGGCGCGCTGGTGGCTGGGGCGAAATACCGCGGCGAATTTGAAGAGCGCTTGAAATCAGTACTCAATGAGCTAGC
GAAAGAAGAAGGCAATATCATCCTCTTCATTGATGAGCTGCACACCATGGTTGGTGCGGGGAAAGGCGAAGGCTCGATGG
ATGCCGGCAACATGCTCAAACCCGCTTTGGCGCGTGGAGAATTGCACTGTGTCGGCGCAACCACTTTAGATGAGTACCGC
CAATACATCGAAAAAGATCCTGCACTAGAACGCCGATTCCAAAAAGTGTTGGTGGATGAGCCCACGGTGGAAGACACCAT
CGCCATCTTGCGTGGATTGAAAGAGCGTTATGAGCTGCATCACCATGTCGAAATCACTGATCCGGCGATCGTGGCGGCAG
CGAGCCTATCGCATCGCTATATTTCCGATCGCCAGTTGCCTGATAAAGCGATTGATTTGATCGATGAAGCGGCTTCAAGT
ATTCGGATGCAGATTGACTCCAAACCAGAAGCTCTGGATAAGCTTGAGCGCAAAATCATCCAACTGAAAATCGAGCAGCA
AGCGCTCTCTAATGAGCACGATGAAGCCAGTGAAAAACGCTTGGCGATCTTAAATGAAGAGCTGCAAGAGAAAGAGCGCG
ATTACGCAGAGTTGGAAGAAGTGTGGAAAGCAGAAAAAGCCGCGCTCTCCGGAACACAACATATTAAAGCGGCACTTGAA
CAAGCGCGGATGGATCTGGAAGTGGCTCGCAGAGCTGGGGATTTGAACCGCATGTCAGAGCTGCAATATGGTCGGATTCC
AGAACTAGAAAAGCAGCTCGATCTGGCCGCGCAAGCAGAAATGCAGGAAATGACTCTGCTGCGCAATAAAGTGACGGATG
CAGAAATTGCCGAAGTGCTTTCAAAACAGACCGGCATTCCCGTATCAAAAATGCTCGAAGCCGAGAAAGAAAAGTTGCTG
CGCATGGAAGAAGTGCTGCATAAACGCGTGATTGGCCAAAAAGAAGCGGTAGAAGTGGTCGCGAATGCGATTCGTCGTAG
CCGCGCGGGGCTTTCTGATCCGAATCGTCCGATTGGCTCCTTCTTATTCTTAGGGCCAACTGGGGTCGGTAAAACCGAGC
TGTGTAAAACCTTGGCTAACTTCCTGTTTGACAGTGAAGATGCCATGGTACGTGTAGATATGTCGGAATTTATGGAGAAA
CACTCGGTTGCTCGCTTAGTCGGTGCGCCTCCAGGTTATGTCGGCTATGAAGAAGGTGGCTACTTAACGGAAGCGGTGCG
CCGTAAACCTTATTCGGTGATTTTGCTCGATGAAGTGGAAAAGGCACACCCGGATGTCTTCAATATTCTGCTGCAAGTCT
TGGATGATGGCCGCTTGACGGACGGGCAAGGGCGCACGGTCGATTTTCGAAATACCGTGGTGATCATGACCTCCAACTTG
GGGTCAAGCCGTATCCAAGAAAATTTTGCAAGGTTGGATTATCAAGGCATCAAAGAACAAGTGATGGACGTAGTCAGCAA
ACACTTCCGTCCTGAGTTCTTGAACCGAGTGGATGAAAGTGTGGTATTCCACCCATTAGGACAAGAGCATATTAAGTCGA
TCGCTTCTATTCAGTTGGCCCGCCTACGTCAACGTTTGGCAGAGCGAGATTACCAACTAGAGGTTGATGATGAGGCGCTG
GATCTGATTGCTCATGTCGGCTTCGATCCGGTTTATGGTGCTCGTCCACTGAAACGCGCGATTCAGCAAAATGTGGAAAA
CCCACTGGCCAAATCGATTCTGGCTGGTAAGTTCCTGCCTGGTTCACCTATTTTACTATCGGTAAAAGACGGGAATATTT
TTGCAAGCCAGTAG

Domains

Predicted by InterProScan.

• AAA domain (Cdc48 subfamily) (AAA_2) (596-759)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (94-145)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (17-68)

• ATPase family associated with various cellular activities (AAA) (AAA) (204-335)

• AAA lid domain (AAA_lid_9) (342-442)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (766-843)

3D structure

• AlphaFold DB: A0AAU8WIQ1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Bacillus subtilis subsp. subtilis str. 168	47.454	100	0.478
clpC	Lactococcus lactis subsp. cremoris KW2	47.186	80.863	0.382