Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   OFY13_RS09085 Genome accession   NZ_CP110188
Coordinates   2011754..2013784 (-) Length   676 a.a.
NCBI ID   WP_000029988.1    Uniprot ID   -
Organism   Vibrio cholerae strain E1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2006754..2018784
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OFY13_RS09060 (OFY13_09060) moaB 2006865..2007377 (-) 513 WP_000509705.1 molybdenum cofactor biosynthesis protein B -
  OFY13_RS09065 (OFY13_09065) moaA 2007437..2008426 (-) 990 WP_000068565.1 GTP 3',8-cyclase MoaA -
  OFY13_RS09070 (OFY13_09070) - 2008733..2009623 (+) 891 WP_000061073.1 YvcK family protein -
  OFY13_RS09075 (OFY13_09075) luxU 2009612..2009953 (-) 342 WP_001209531.1 quorum-sensing phosphorelay protein LuxU -
  OFY13_RS09080 (OFY13_09080) luxO 2009957..2011324 (-) 1368 WP_001888250.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  OFY13_RS09085 (OFY13_09085) uvrB 2011754..2013784 (-) 2031 WP_000029988.1 excinuclease ABC subunit UvrB Machinery gene
  OFY13_RS09095 (OFY13_09095) rsxA 2014666..2015247 (+) 582 WP_000141550.1 electron transport complex subunit RsxA -
  OFY13_RS09100 (OFY13_09100) rsxB 2015247..2015834 (+) 588 WP_000104488.1 electron transport complex subunit RsxB -
  OFY13_RS09105 (OFY13_09105) rsxC 2015843..2018284 (+) 2442 WP_248430202.1 electron transport complex subunit RsxC -

Sequence

Protein


Download         Length: 676 a.a.        Molecular weight: 76629.37 Da        Isoelectric Point: 5.0342

>NTDB_id=683434 OFY13_RS09085 WP_000029988.1 2011754..2013784(-) (uvrB) [Vibrio cholerae strain E1]
MSKAFELVSDYQPAGDQPTAIKQLLEGLEAGLAHQTLLGVTGSGKTFTLANVIATAQRPTIILAPNKTLAAQLYGEMKAF
FPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQMRLSATKALLERKDAVIVASVSAIYGLGDPDSYLKMMLH
LRRGDVINQRDMLRRLAELQYSRNDMAFERGQFRVRGEVIDIFPAESDQEAVRVEMFDDEVECISLFDPLTGVITSRDLA
RFTIYPKTHYVTPRERILEAIEQIKSELQVRRQYLLDNNKLLEEQRISQRTQFDIEMMNELGFCSGIENYSRYLSGRAEG
EPPPTLFDYLPHDGLLIIDESHVTVPQIGAMFKGDRSRKETLVEFGFRLPSALDNRPLKFDEFEALAPQTIFVSATPSEY
ELTKSGGEVAEQVVRPTGLLDPIIEVRPVATQVDDLLSEARIRAANDERILVTTLTKRMAEDLTEYLHEHGVKVRYLHSD
IDTVERVEIIRDLRLGVFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSERSLIQTMGRAARNVNGKAILYADSITK
SMRKAIDETERRREKQLAYNEQRGITPQPLKRSVKDIMELGDIAKSRKQKNSKVVPLAKVAEESAAYQVLTPQQLEKEIS
KLEAAMYQHAQNLEFELAAQKRDEIHQLRQQFIANS

Nucleotide


Download         Length: 2031 bp        

>NTDB_id=683434 OFY13_RS09085 WP_000029988.1 2011754..2013784(-) (uvrB) [Vibrio cholerae strain E1]
ATGAGCAAAGCATTTGAATTGGTTTCAGACTATCAACCTGCTGGTGATCAGCCTACCGCGATTAAGCAATTGCTGGAGGG
GTTGGAAGCGGGCTTGGCTCATCAAACTCTGCTTGGGGTAACGGGTTCGGGTAAAACCTTTACGTTAGCGAATGTGATTG
CCACCGCGCAGCGTCCCACCATTATACTTGCGCCTAATAAGACACTGGCGGCTCAATTGTACGGTGAAATGAAAGCCTTT
TTTCCCAACAATGCGGTGGAGTATTTCGTTTCTTACTACGACTACTATCAACCAGAAGCCTATGTACCGACCACGGATAC
TTTTATAGAAAAAGACGCGTCAGTGAACGCTCATATTGAACAGATGCGCTTATCAGCCACTAAAGCCTTACTTGAGCGCA
AAGATGCGGTGATTGTCGCTTCGGTTTCTGCCATCTATGGTCTGGGCGATCCGGACTCTTATCTAAAAATGATGCTCCAT
TTGCGTCGTGGTGATGTGATTAATCAACGTGACATGTTGCGTCGTTTGGCGGAGCTGCAATATTCACGCAATGATATGGC
ATTTGAGCGCGGTCAGTTCCGGGTACGCGGAGAAGTGATTGATATTTTCCCTGCCGAATCGGATCAAGAAGCTGTTCGAG
TGGAAATGTTTGATGATGAAGTCGAATGCATCAGCTTATTTGACCCGCTGACGGGCGTGATTACGTCACGCGATTTAGCT
CGGTTTACGATTTACCCCAAAACTCACTATGTCACCCCACGCGAGCGCATTCTTGAGGCGATAGAGCAGATTAAGAGCGA
GTTACAGGTCCGTCGCCAATATTTGCTGGATAACAATAAATTGCTGGAAGAGCAGCGGATTTCTCAGCGAACTCAGTTTG
ATATTGAGATGATGAACGAATTGGGATTCTGCTCAGGGATCGAAAACTACTCACGTTACCTAAGTGGTCGTGCAGAAGGC
GAGCCGCCTCCAACGCTCTTTGATTACTTGCCTCACGATGGCTTGCTGATCATCGATGAATCACACGTCACCGTGCCGCA
AATTGGCGCGATGTTTAAAGGCGATCGTTCGCGAAAAGAAACGCTGGTGGAGTTCGGTTTTCGCCTGCCGTCAGCCTTGG
ATAACCGCCCACTTAAGTTTGATGAATTTGAAGCATTAGCACCGCAAACCATCTTTGTGTCAGCAACACCGAGTGAATAT
GAGCTCACTAAATCGGGTGGTGAAGTGGCGGAGCAGGTGGTGCGTCCAACCGGTTTGTTAGACCCGATCATTGAAGTACG
TCCGGTCGCCACTCAGGTGGATGATCTGCTTTCTGAAGCGCGCATTCGCGCGGCCAATGATGAGCGGATTTTGGTGACTA
CCTTAACCAAACGCATGGCCGAGGACTTAACCGAATATCTGCATGAGCATGGTGTGAAAGTTCGCTATTTACACTCGGAC
ATTGATACCGTCGAACGGGTAGAAATTATTCGTGATTTACGATTAGGGGTGTTTGATGTGTTGGTGGGGATCAACTTGCT
ACGTGAAGGTCTGGATATGCCAGAAGTCGCTTTAGTGGCGATTTTGGATGCTGATAAAGAAGGCTTTTTGCGTTCCGAGC
GTTCACTTATCCAGACCATGGGTCGTGCAGCACGTAACGTGAATGGTAAAGCAATTTTGTATGCCGACTCGATCACCAAA
TCCATGCGTAAAGCGATCGATGAAACCGAGCGTCGCCGTGAGAAGCAGCTGGCTTATAATGAGCAGCGCGGTATCACGCC
GCAGCCTTTAAAACGCAGCGTTAAAGACATCATGGAGCTGGGCGATATTGCGAAATCGCGTAAACAGAAGAACAGCAAAG
TGGTGCCATTGGCGAAAGTGGCTGAAGAATCGGCGGCTTACCAAGTGTTGACCCCTCAGCAGCTTGAAAAAGAGATCAGT
AAATTAGAAGCCGCAATGTATCAGCATGCACAGAACTTAGAGTTTGAGTTGGCCGCGCAAAAACGTGATGAAATTCATCA
GTTGCGTCAACAGTTTATCGCCAATAGTTAG

Domains

Predicted by InterProScan.

Type III restriction enzyme, res subunit (ResIII)

(16-119)

UvrB/uvrC motif (UVR)

(636-671)

Helicase conserved C-terminal domain (Helicase_C)

(442-545)

Ultra-violet resistance protein B (UvrB)

(553-594)

UvrB interaction domain (UvrB_inter)

(159-250)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

55.539

97.485

0.541
  uvrB Streptococcus pneumoniae R6

55.539

97.485

0.541
  uvrB Streptococcus pneumoniae D39

55.539

97.485

0.541