Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   SNAG_RS03190 Genome accession   NZ_AP017652
Coordinates   585934..587892 (+) Length   652 a.a.
NCBI ID   WP_096406463.1    Uniprot ID   -
Organism   Streptococcus sp. NPS 308     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 580934..592892
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SNAG_RS03165 (SNAG_0625) - 581074..581586 (+) 513 WP_096406453.1 YiiX/YebB-like N1pC/P60 family cysteine hydrolase -
  SNAG_RS03170 (SNAG_0626) - 581570..582220 (+) 651 WP_096406456.1 DUF1803 domain-containing protein -
  SNAG_RS03175 (SNAG_0627) - 582322..582522 (+) 201 WP_000051185.1 CsbD family protein -
  SNAG_RS03180 (SNAG_0628) - 582558..584003 (-) 1446 WP_096406458.1 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase -
  SNAG_RS03185 (SNAG_0629) - 584109..585731 (+) 1623 WP_096406461.1 polysaccharide biosynthesis protein -
  SNAG_RS03190 (SNAG_0630) amiA3 585934..587892 (+) 1959 WP_096406463.1 peptide ABC transporter substrate-binding protein Regulator
  SNAG_RS03195 (SNAG_0631) - 588038..589132 (+) 1095 WP_096406466.1 cystathionine gamma-synthase -
  SNAG_RS03200 (SNAG_0632) - 589140..590306 (+) 1167 WP_096406468.1 MalY/PatB family protein -

Sequence

Protein


Download         Length: 652 a.a.        Molecular weight: 72820.96 Da        Isoelectric Point: 4.7373

>NTDB_id=68343 SNAG_RS03190 WP_096406463.1 585934..587892(+) (amiA3) [Streptococcus sp. NPS 308]
MKKSKAKYLTLAGVVLSAGILLSACGNSASSSKTYNYVYSSDPSSLNYLAENRATTNDIVTNLVDGLMENDQYGNYVPSL
AEDWTVSKDGLTYTYKLRKDAKWYTYEGEEYAPVTAQDFVTGLKYAADKKSEALYLVQDSVAGLDDYINGKTTDFSTVGV
KAIDDQTVQYTLTRPESYWNSKTTSTILFPVNADFLKSKGDDFGKVDPSSILYNGPFLMKSFVSKSVIEFKKNPNYWDEK
NVFVDDVKLAYYDGSDQDALARNFVEGVYSYARLYPNSSSFEGIKEKNKDNIIYSMQNATSYYINFNLDRKSYNFTSKSS
DIEKKSTQEAVLNKNFRQAFNYAYNRTAYGAQSQGEDGATKIIRNLVVPPTFVSINGKDFGDVVSEKMVNYGQEWQGINF
ADAQDPYYNPDKAKAKFAEAKKELEAKGVQFPIHLDVSVDQSAKKGVLEASSLKQSIESVLGAENVVIDIQQLSTDDFDN
SSYLAQTAAQKDFDIYNGGWSADYLDPSSYLDILNVNNGGMLQNIGLEPGEVNDKAKAVGLDTYTQMLEEANKEQDPAKR
YEKYAEIQAWLVDSALAIPNVSQGGTPTLRKTVPFSSPFSQAGNKGVESYKYLKLQDKTVTADEYEKAKEKWLKEKEESN
KKAQEELAKHVK

Nucleotide


Download         Length: 1959 bp        

>NTDB_id=68343 SNAG_RS03190 WP_096406463.1 585934..587892(+) (amiA3) [Streptococcus sp. NPS 308]
ATGAAAAAGTCTAAGGCCAAGTATCTGACACTGGCAGGTGTCGTGTTAAGCGCAGGTATCCTACTAAGCGCATGTGGGAA
CTCAGCAAGTTCATCTAAAACATACAACTATGTTTACTCTAGTGATCCATCTAGTTTGAACTATCTGGCTGAAAACCGTG
CAACAACCAATGATATTGTTACCAATTTGGTTGATGGTTTGATGGAAAATGACCAATATGGGAACTATGTTCCATCTTTA
GCGGAGGACTGGACCGTTTCTAAGGATGGTTTGACCTATACCTATAAACTTCGTAAGGACGCTAAGTGGTATACATACGA
GGGTGAAGAATACGCCCCTGTAACGGCTCAAGACTTCGTGACAGGTTTGAAATATGCTGCTGATAAAAAATCCGAAGCCT
TGTACCTGGTTCAAGACTCTGTAGCAGGTTTGGATGACTATATCAACGGGAAAACAACTGACTTTTCAACTGTCGGTGTT
AAGGCGATTGACGACCAAACAGTTCAGTACACTTTGACACGTCCAGAATCTTATTGGAATTCTAAAACAACTTCAACCAT
TCTCTTCCCTGTCAATGCAGATTTCTTAAAATCAAAAGGGGATGACTTTGGTAAGGTAGACCCTTCTAGTATTTTGTACA
ATGGACCTTTCTTGATGAAATCGTTTGTTTCAAAATCTGTTATCGAATTCAAGAAAAATCCCAACTACTGGGATGAAAAA
AATGTCTTTGTGGATGATGTGAAATTGGCCTATTATGATGGTAGTGACCAAGATGCACTAGCACGTAACTTTGTAGAAGG
AGTCTACAGCTATGCACGTCTCTATCCAAATAGCTCAAGTTTTGAAGGAATTAAAGAGAAGAACAAGGATAACATCATCT
ATAGTATGCAAAATGCAACTTCTTATTACATAAACTTCAACTTGGACAGAAAGTCTTATAACTTCACGTCTAAATCTTCA
GATATCGAAAAGAAATCAACCCAAGAAGCAGTTCTGAATAAAAACTTCCGTCAAGCCTTCAACTATGCTTATAACCGTAC
AGCCTATGGAGCACAATCTCAAGGGGAGGACGGAGCAACAAAGATTATTCGTAACTTGGTTGTACCTCCAACATTTGTAA
GCATCAACGGAAAAGACTTTGGCGATGTTGTTTCAGAAAAGATGGTCAACTATGGCCAAGAATGGCAAGGAATCAACTTT
GCAGATGCGCAAGATCCATACTACAATCCTGACAAGGCTAAAGCTAAATTTGCAGAAGCTAAGAAAGAATTGGAAGCTAA
GGGTGTGCAATTCCCAATCCACTTGGATGTATCTGTAGACCAATCAGCTAAAAAAGGTGTACTTGAAGCAAGCTCTTTGA
AACAATCCATCGAATCTGTTCTAGGAGCTGAGAATGTGGTTATCGATATCCAACAGCTATCAACAGATGACTTTGACAAC
TCTAGCTACCTAGCTCAAACTGCAGCTCAAAAAGACTTTGATATCTATAATGGCGGTTGGAGTGCGGACTACTTGGATCC
ATCAAGTTATCTTGATATCTTAAATGTCAATAACGGTGGTATGTTGCAAAACATTGGTCTAGAACCAGGTGAGGTCAATG
ACAAGGCTAAGGCAGTTGGTCTGGATACTTACACTCAAATGTTAGAAGAAGCGAACAAGGAGCAAGATCCAGCAAAACGT
TATGAAAAATATGCTGAAATTCAAGCTTGGCTCGTTGATAGCGCCCTTGCTATTCCAAACGTTTCTCAGGGTGGAACACC
GACCTTGAGAAAGACAGTTCCATTCTCATCACCATTCTCACAAGCTGGAAATAAGGGTGTCGAATCATACAAGTATCTCA
AGTTACAAGATAAGACTGTAACGGCTGATGAGTATGAAAAAGCTAAAGAAAAATGGTTGAAAGAAAAAGAAGAATCAAAT
AAGAAAGCCCAAGAAGAACTGGCAAAACACGTTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(76-519)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMG 18311

56.601

100

0.572
  amiA Streptococcus salivarius strain HSISS4

56.687

100

0.572
  amiA3 Streptococcus thermophilus LMD-9

56.297

100

0.569

Multiple sequence alignment