Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   SNAG_RS01520 Genome accession   NZ_AP017652
Coordinates   265897..267861 (+) Length   654 a.a.
NCBI ID   WP_096405971.1    Uniprot ID   A0A1E1G8Z7
Organism   Streptococcus sp. NPS 308     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 260897..272861
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SNAG_RS01495 (SNAG_0300) - 261014..261976 (-) 963 WP_096405968.1 asparaginase -
  SNAG_RS01500 (SNAG_0301) - 262042..263427 (+) 1386 WP_000453132.1 Cof-type HAD-IIB family hydrolase -
  SNAG_RS01505 (SNAG_0302) - 263466..263918 (-) 453 WP_000079162.1 universal stress protein -
  SNAG_RS01510 (SNAG_0303) - 264260..265474 (+) 1215 WP_096405969.1 pyridoxal phosphate-dependent aminotransferase -
  SNAG_RS01515 (SNAG_0304) rpmH 265619..265753 (+) 135 WP_000831905.1 50S ribosomal protein L34 -
  SNAG_RS01520 (SNAG_0305) amiA 265897..267861 (+) 1965 WP_096405971.1 peptide ABC transporter substrate-binding protein Regulator
  SNAG_RS01525 (SNAG_0306) - 268104..269948 (-) 1845 WP_096405972.1 APC family permease -
  SNAG_RS01530 (SNAG_0307) - 270100..270873 (+) 774 WP_096405974.1 TatD family hydrolase -
  SNAG_RS01535 (SNAG_0308) rnmV 270873..271451 (+) 579 WP_096405975.1 ribonuclease M5 -
  SNAG_RS01540 (SNAG_0309) - 271448..272302 (+) 855 WP_096405977.1 SDR family NAD(P)-dependent oxidoreductase -
  SNAG_RS01545 (SNAG_0310) - 272519..272854 (+) 336 WP_096405978.1 hypothetical protein -

Sequence

Protein


Download         Length: 654 a.a.        Molecular weight: 72971.81 Da        Isoelectric Point: 4.5727

>NTDB_id=68329 SNAG_RS01520 WP_096405971.1 265897..267861(+) (amiA) [Streptococcus sp. NPS 308]
MKKSQALLLGAGILSASFLMAACGSTQSNAADKTYSYVFASNPDTLDYITSTRGSTSSITTNLIDGLLENDKYGNLVPSM
AESWTVSKDGLTYTYKIRQGAKWYTSEGEEYAEVTAHDFVTGLKYAADKKAENLYLVQDSIKGLADYVEGKTSDFETVGV
KAVDDYTLQYTLNKPESYWNSKTTGGILSPVNEAFLKSKGDDFGSVTPSSILSNGPYLFKSFTSKSLIEFEKNPNYWDKD
NVKIEKVKLSFYDGSDQDSLARGFLEGNYTDGRIFPTSSVFDQLKKGNEDKITYTPQNAVTFYYLFNVNRQSYNQTMKQT
DKEKTDSRLAMQNKDFRQAINFAFDRHAYAAQTNGEDGADRILRNTVTPSNFVQIGGKNFGDAVNEKIVNYGTEWSNINL
NDAQPAFLNVDKAKAEFAKAKESLQAEGATFPIHLDMLVDQTAKLDVQQASSFKQTVEETLGSDNIVIDVIQLSPDEKDN
ATFFADTAEQKDYDIDISGWSGDYSDPKTYLDLLDPESGSQLKNLGLTPGKDNDVKEKIDLSTYKKLLDTAENEVENTQA
RYEKFAEVQAWLTDSALFLPVQSGGANPIFRKTVPFTGAFSFVGHKGDADNYKYVELQKEPVTAKQYQELYEKWQKEKAE
SNKKAQEDLANHIQ

Nucleotide


Download         Length: 1965 bp        

>NTDB_id=68329 SNAG_RS01520 WP_096405971.1 265897..267861(+) (amiA) [Streptococcus sp. NPS 308]
ATGAAGAAATCACAAGCCCTTCTACTAGGGGCTGGAATTTTGAGTGCAAGCTTTTTGATGGCAGCTTGTGGCTCAACACA
GTCAAATGCTGCAGATAAAACCTACTCATATGTATTTGCAAGTAACCCAGATACATTAGACTATATCACTTCAACACGTG
GTTCGACCTCTAGTATTACGACAAACTTGATCGATGGTTTGTTGGAAAATGATAAGTACGGAAACCTCGTCCCTTCTATG
GCAGAGTCATGGACAGTATCAAAAGATGGTTTGACCTATACCTATAAAATCCGCCAAGGGGCTAAGTGGTATACCTCTGA
GGGAGAAGAATATGCTGAAGTGACAGCTCATGACTTTGTGACCGGTCTGAAGTATGCAGCTGATAAAAAGGCTGAAAACT
TGTACTTGGTCCAAGACTCAATCAAAGGTTTGGCAGACTATGTTGAGGGGAAAACATCTGACTTTGAGACTGTTGGAGTC
AAGGCTGTGGATGATTATACTCTTCAATACACTTTGAACAAGCCGGAGTCTTATTGGAATTCGAAGACAACTGGGGGGAT
TTTGAGCCCTGTGAATGAAGCCTTTTTGAAATCCAAGGGAGATGACTTTGGAAGTGTGACGCCTTCTAGCATCCTGTCCA
ATGGGCCATACTTGTTCAAGTCTTTCACATCAAAATCTTTAATTGAGTTTGAAAAGAACCCTAATTACTGGGATAAGGAC
AATGTGAAGATTGAGAAGGTAAAACTTTCCTTCTATGATGGTTCTGACCAAGATAGTTTGGCTCGAGGATTTTTAGAAGG
TAACTACACAGACGGACGTATCTTCCCGACAAGTTCTGTTTTTGACCAGCTGAAAAAAGGGAATGAGGATAAGATTACTT
ATACTCCTCAAAACGCTGTGACCTTCTATTATCTTTTCAATGTCAACCGTCAAAGTTACAATCAAACCATGAAACAGACG
GATAAAGAAAAGACGGATTCACGTCTAGCTATGCAAAATAAAGATTTCCGTCAGGCGATTAACTTTGCCTTTGACCGTCA
TGCCTACGCTGCGCAGACAAATGGAGAAGATGGAGCTGACCGTATTCTTCGAAACACAGTCACACCGAGCAACTTTGTTC
AAATCGGTGGCAAAAACTTCGGGGATGCTGTCAATGAAAAGATAGTCAACTATGGTACAGAGTGGTCAAATATCAATCTG
AACGACGCGCAACCTGCCTTCTTGAATGTTGATAAAGCCAAGGCAGAATTCGCTAAAGCCAAAGAAAGTTTGCAGGCAGA
AGGTGCTACCTTCCCGATCCATTTAGATATGTTGGTTGACCAGACTGCTAAGTTAGACGTACAGCAAGCAAGTTCTTTCA
AGCAGACAGTTGAAGAAACACTTGGATCAGACAATATTGTTATCGATGTGATTCAATTGTCTCCAGACGAGAAAGACAAT
GCAACCTTCTTTGCTGACACAGCTGAACAAAAGGACTATGACATCGATATCTCAGGCTGGAGCGGAGATTACTCTGATCC
TAAGACCTATCTTGACCTCTTGGATCCAGAATCTGGTTCTCAGTTAAAAAATCTTGGTTTGACCCCAGGAAAAGACAATG
ATGTCAAGGAAAAAATTGATCTATCTACCTATAAGAAGTTGTTGGATACGGCCGAGAATGAGGTTGAAAATACTCAGGCT
CGCTATGAAAAATTTGCTGAAGTTCAAGCTTGGCTAACAGATAGTGCTCTTTTCCTACCCGTTCAAAGCGGTGGAGCCAA
TCCAATCTTCCGTAAGACTGTACCATTCACAGGAGCCTTCTCATTTGTCGGACACAAAGGGGATGCGGACAACTACAAAT
ATGTCGAGTTGCAAAAGGAGCCCGTAACTGCGAAACAGTATCAAGAGCTTTATGAAAAATGGCAGAAAGAAAAAGCTGAA
TCCAACAAAAAAGCTCAAGAAGATTTAGCTAACCATATTCAATGA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(76-515)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1E1G8Z7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

55.319

100

0.557
  amiA3 Streptococcus thermophilus LMD-9

55.015

100

0.554
  amiA3 Streptococcus thermophilus LMG 18311

54.711

100

0.55

Multiple sequence alignment