Detailed information NTG0068294

Bioinformatically predicted

Overview

• Name: dprA
• Type: Machinery gene
• Locus tag: HPPMSS1_RS05600
• Genome accession: NZ_AP017633
• Coordinates: 1184288..1185088 (-)
• Length: 266 a.a.
• NCBI ID: WP_077231809.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain PMSS1
• Function: ssDNA binding; loading RecA onto ssDNA (predicted from homology) DNA processing

Genomic Context

Location: 1179288..1190088

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HPPMSS1_RS05570 (HPATCC43504_RS05795)	recJ	1179571..1181121 (+)	1551	WP_077231814.1	single-stranded-DNA-specific exonuclease RecJ	-
HPPMSS1_RS05575 (HPATCC43504_RS05800)	-	1181121..1182002 (+)	882	WP_077231813.1	RluA family pseudouridine synthase	-
HPPMSS1_RS05580 (HPATCC43504_RS05805)	-	1182115..1182675 (-)	561	WP_077231812.1	hypothetical protein	-
HPPMSS1_RS05585 (HPATCC43504_RS05810)	-	1182659..1182997 (-)	339	WP_077231811.1	hypothetical protein	-
HPPMSS1_RS07930	-	1183185..1183761 (-)	577	Protein_1100	tetratricopeptide repeat protein	-
HPPMSS1_RS05595 (HPATCC43504_RS05820)	dprB	1183887..1184291 (-)	405	WP_077231810.1	Holliday junction resolvase RuvX	Machinery gene
HPPMSS1_RS05600 (HPATCC43504_RS05825)	dprA	1184288..1185088 (-)	801	WP_077231809.1	DNA-processing protein DprA	Machinery gene
HPPMSS1_RS05605 (HPATCC43504_RS05830)	minE	1185095..1185328 (-)	234	WP_000051430.1	cell division topological specificity factor MinE	-
HPPMSS1_RS05610 (HPATCC43504_RS05835)	minD	1185325..1186131 (-)	807	WP_001019051.1	septum site-determining protein MinD	-
HPPMSS1_RS05615 (HPATCC43504_RS05840)	ilvC	1186155..1187147 (-)	993	WP_077231808.1	ketol-acid reductoisomerase	-
HPPMSS1_RS05625 (HPATCC43504_RS05850)	-	1187396..1188178 (+)	783	WP_077231807.1	NAD+ synthase	-
HPPMSS1_RS05630 (HPATCC43504_RS05855)	-	1188175..1189113 (+)	939	WP_077231806.1	tetraacyldisaccharide 4'-kinase	-
HPPMSS1_RS05635 (HPATCC43504_RS05860)	pseH	1189046..1189588 (-)	543	WP_077231805.1	UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29845.82 Da
• Isoelectric Point: 8.5826

>NTDB_id=68294 HPPMSS1_RS05600 WP_077231809.1 1184288..1185088(-) (dprA) [Helicobacter pylori strain PMSS1]
MKSHFQYSALENIPKAFDILKDPPKKLYCVGDTKLLEAPLKVAIIGTRRPTPYSKQHTITLARELAKNGAVIVSGGALGV
DIIAQENALPKTIMLSPCSLDLIYPTNNHKVIQEIAQNGLILSEYEKDFMPVKGSFLARNRLVIALSDVVIIPQADLKSG
SMSSARLAQKYQKPLFVLPQRLNESDGTNELLEKGQAQGIFNIQNFINTLLKDYHLKEMPEMKDEFLEYCAKNPSYEEAY
LKFGDKLLEYELLGKIKRINHLVVLA

Nucleotide

• Length: 801 bp

>NTDB_id=68294 HPPMSS1_RS05600 WP_077231809.1 1184288..1185088(-) (dprA) [Helicobacter pylori strain PMSS1]
ATGAAAAGCCATTTCCAATACAGCGCGCTAGAGAATATCCCTAAAGCCTTTGACATTCTCAAAGACCCCCCTAAAAAGCT
CTATTGTGTGGGCGATACCAAGCTTTTAGAAGCGCCTTTAAAAGTGGCTATCATCGGCACAAGAAGACCCACCCCTTACA
GCAAGCAACACACGATCACTCTAGCCAGAGAGCTTGCTAAAAATGGCGCGGTTATTGTGAGTGGGGGAGCGTTAGGCGTG
GATATTATCGCTCAAGAAAACGCCTTACCAAAAACCATCATGCTTTCGCCTTGCAGTTTGGATTTGATCTATCCTACGAA
CAACCATAAAGTGATCCAAGAAATCGCGCAAAACGGCTTGATTTTAAGCGAATATGAAAAAGACTTCATGCCCGTTAAAG
GCTCTTTTTTAGCGAGAAACCGCCTGGTGATCGCTTTAAGCGATGTAGTGATTATCCCCCAAGCGGATTTAAAAAGCGGC
TCTATGAGCAGCGCGAGATTAGCCCAAAAATACCAAAAACCCTTGTTTGTTTTGCCTCAGCGCTTAAATGAGAGCGATGG
CACTAATGAGCTTTTAGAAAAAGGGCAGGCTCAAGGGATATTTAATATTCAAAATTTTATAAACACCCTTTTAAAAGACT
ACCATTTAAAAGAAATGCCTGAAATGAAAGATGAATTTTTAGAATATTGCGCCAAAAACCCTAGCTATGAAGAGGCGTAT
CTCAAATTTGGGGATAAGCTTTTAGAATACGAGCTGTTGGGTAAGATCAAGCGCATCAATCATCTCGTGGTGTTAGCATG
A

Domains

Predicted by InterproScan.

• DNA recombination-mediator protein A (DNA_processg_A) (12-197)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
dprA	Helicobacter pylori 26695	97.368	100	0.974
dprA	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	48.23	84.962	0.41