Detailed information
Bioinformatically predicted
Overview
| Name | dprB | Type | Machinery gene |
| Locus tag | HPPMSS1_RS05595 | Genome accession | NZ_AP017633 |
| Coordinates | 1183887..1184291 (-) | Length | 134 a.a. |
| NCBI ID | WP_077231810.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain PMSS1 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 1178887..1189291
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HPPMSS1_RS05570 (HPATCC43504_RS05795) | recJ | 1179571..1181121 (+) | 1551 | WP_077231814.1 | single-stranded-DNA-specific exonuclease RecJ | - |
| HPPMSS1_RS05575 (HPATCC43504_RS05800) | - | 1181121..1182002 (+) | 882 | WP_077231813.1 | RluA family pseudouridine synthase | - |
| HPPMSS1_RS05580 (HPATCC43504_RS05805) | - | 1182115..1182675 (-) | 561 | WP_077231812.1 | hypothetical protein | - |
| HPPMSS1_RS05585 (HPATCC43504_RS05810) | - | 1182659..1182997 (-) | 339 | WP_077231811.1 | hypothetical protein | - |
| HPPMSS1_RS07930 | - | 1183185..1183761 (-) | 577 | Protein_1100 | tetratricopeptide repeat protein | - |
| HPPMSS1_RS05595 (HPATCC43504_RS05820) | dprB | 1183887..1184291 (-) | 405 | WP_077231810.1 | Holliday junction resolvase RuvX | Machinery gene |
| HPPMSS1_RS05600 (HPATCC43504_RS05825) | dprA | 1184288..1185088 (-) | 801 | WP_077231809.1 | DNA-processing protein DprA | Machinery gene |
| HPPMSS1_RS05605 (HPATCC43504_RS05830) | minE | 1185095..1185328 (-) | 234 | WP_000051430.1 | cell division topological specificity factor MinE | - |
| HPPMSS1_RS05610 (HPATCC43504_RS05835) | minD | 1185325..1186131 (-) | 807 | WP_001019051.1 | septum site-determining protein MinD | - |
| HPPMSS1_RS05615 (HPATCC43504_RS05840) | ilvC | 1186155..1187147 (-) | 993 | WP_077231808.1 | ketol-acid reductoisomerase | - |
| HPPMSS1_RS05625 (HPATCC43504_RS05850) | - | 1187396..1188178 (+) | 783 | WP_077231807.1 | NAD+ synthase | - |
| HPPMSS1_RS05630 (HPATCC43504_RS05855) | - | 1188175..1189113 (+) | 939 | WP_077231806.1 | tetraacyldisaccharide 4'-kinase | - |
Sequence
Protein
Download Length: 134 a.a. Molecular weight: 15198.71 Da Isoelectric Point: 9.1627
>NTDB_id=68293 HPPMSS1_RS05595 WP_077231810.1 1183887..1184291(-) (dprB) [Helicobacter pylori strain PMSS1]
MILACDVGLKRIGIAMLLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEHFIKLVDFKGE
IVFINEDNSSIEAYDNLEHLGRKNKRIAIKDGRLDSLSACRILERYCQKVLKKG
MILACDVGLKRIGIAMLLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEHFIKLVDFKGE
IVFINEDNSSIEAYDNLEHLGRKNKRIAIKDGRLDSLSACRILERYCQKVLKKG
Nucleotide
Download Length: 405 bp
>NTDB_id=68293 HPPMSS1_RS05595 WP_077231810.1 1183887..1184291(-) (dprB) [Helicobacter pylori strain PMSS1]
ATGATTTTAGCATGCGATGTGGGGTTAAAACGCATTGGCATCGCTATGCTTTTAAACGGCGTTATCTTGCCTTTAGAAGC
GATTTTACGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGGGAAAAAAACATTCAAGTGCTAGTGG
TGGGCAAGCCCAATGAAAGCTATGCGGATACGAACGCACGCATTGAGCATTTTATCAAGCTTGTAGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGATAATTCTAGCATAGAAGCTTATGATAATTTAGAGCATTTGGGTAGGAAAAATAAGCGGAT
CGCTATCAAAGACGGCCGGTTAGACTCTTTGAGCGCTTGCAGGATCTTAGAGCGCTATTGCCAGAAGGTTTTAAAAAAGG
GCTAG
ATGATTTTAGCATGCGATGTGGGGTTAAAACGCATTGGCATCGCTATGCTTTTAAACGGCGTTATCTTGCCTTTAGAAGC
GATTTTACGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGGGAAAAAAACATTCAAGTGCTAGTGG
TGGGCAAGCCCAATGAAAGCTATGCGGATACGAACGCACGCATTGAGCATTTTATCAAGCTTGTAGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGATAATTCTAGCATAGAAGCTTATGATAATTTAGAGCATTTGGGTAGGAAAAATAAGCGGAT
CGCTATCAAAGACGGCCGGTTAGACTCTTTGAGCGCTTGCAGGATCTTAGAGCGCTATTGCCAGAAGGTTTTAAAAAAGG
GCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| dprB | Helicobacter pylori 26695 |
95.455 |
98.507 |
0.94 |