Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   OHM47_RS06600 Genome accession   NZ_CP109939
Coordinates   1288542..1289225 (-) Length   227 a.a.
NCBI ID   WP_029178325.1    Uniprot ID   -
Organism   Streptococcus suis strain ID36054     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1283542..1294225
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHM47_RS06575 (OHM47_06575) - 1283843..1284160 (-) 318 WP_024384973.1 PadR family transcriptional regulator -
  OHM47_RS06580 (OHM47_06580) - 1284157..1284321 (-) 165 WP_024381618.1 hypothetical protein -
  OHM47_RS06585 (OHM47_06585) - 1284689..1286701 (-) 2013 WP_043033027.1 ABC transporter permease -
  OHM47_RS06590 (OHM47_06590) - 1286703..1287461 (-) 759 WP_024382815.1 ABC transporter ATP-binding protein -
  OHM47_RS06595 (OHM47_06595) - 1287557..1288549 (-) 993 WP_024382816.1 HAMP domain-containing sensor histidine kinase -
  OHM47_RS06600 (OHM47_06600) braR 1288542..1289225 (-) 684 WP_029178325.1 response regulator transcription factor Regulator
  OHM47_RS06605 (OHM47_06605) - 1289394..1290575 (+) 1182 WP_029178326.1 DUF2974 domain-containing protein -
  OHM47_RS06610 (OHM47_06610) - 1290590..1291714 (-) 1125 WP_029178327.1 aminotransferase -
  OHM47_RS06615 (OHM47_06615) - 1291878..1292639 (-) 762 WP_029174784.1 nuclear transport factor 2 family protein -
  OHM47_RS06620 (OHM47_06620) - 1292651..1294162 (-) 1512 WP_029178328.1 ABC transporter permease/substrate-binding protein -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 26590.80 Da        Isoelectric Point: 4.6255

>NTDB_id=682375 OHM47_RS06600 WP_029178325.1 1288542..1289225(-) (braR) [Streptococcus suis strain ID36054]
MQKILLIEDDKTIRQLVAKNLINWGYQVQEVKDFQTVLEQMEEFQPHLILLDIGLPFFNGYYWCQEIRKTSRVPIMFLSS
HDQPMDIVMAINMGADDYVTKPFEMTVLLAKIQGLLRRTYDFVGEQSLLWFEEISLDLKTMQVSYGQVVEELTRNEFQIL
RVLFEHGKEVVGREELMRELWNSDIFVDDNTLSVNIARLRKKLAELDLPDVIATKKGVGYGLVWTHE

Nucleotide


Download         Length: 684 bp        

>NTDB_id=682375 OHM47_RS06600 WP_029178325.1 1288542..1289225(-) (braR) [Streptococcus suis strain ID36054]
ATGCAGAAAATTCTTCTTATCGAGGATGATAAAACGATTAGGCAACTAGTTGCTAAAAACTTGATAAACTGGGGTTACCA
GGTGCAAGAGGTCAAGGATTTTCAGACGGTGTTGGAACAGATGGAAGAGTTTCAGCCCCATTTGATTTTACTGGATATTG
GCCTGCCGTTTTTCAATGGCTATTACTGGTGTCAGGAAATTCGCAAGACATCCCGTGTTCCCATTATGTTTCTATCTTCC
CATGACCAGCCAATGGATATTGTTATGGCGATCAATATGGGGGCGGATGACTATGTGACCAAGCCCTTTGAAATGACGGT
TCTCCTGGCCAAAATACAGGGGCTTCTCAGAAGAACCTATGACTTTGTCGGAGAACAAAGTTTACTCTGGTTTGAGGAGA
TTTCCCTAGACCTAAAGACCATGCAGGTGTCTTATGGACAGGTTGTGGAAGAACTGACGCGAAATGAATTTCAGATTTTA
CGCGTTTTATTTGAACATGGCAAGGAAGTGGTCGGCCGTGAGGAGTTGATGAGAGAACTCTGGAACAGTGATATTTTTGT
GGATGACAATACTTTGTCGGTTAATATCGCTCGCCTGCGTAAGAAATTGGCAGAACTGGATCTGCCAGATGTGATTGCGA
CCAAGAAAGGAGTAGGCTACGGCCTGGTGTGGACACATGAATAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-113)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(151-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

47.248

96.035

0.454
  vicR Streptococcus mutans UA159

38.696

100

0.392
  micA Streptococcus pneumoniae Cp1015

37.555

100

0.379