Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   M1M80_RS12655 Genome accession   NZ_CP096592
Coordinates   2530683..2531114 (-) Length   143 a.a.
NCBI ID   WP_060399018.1    Uniprot ID   -
Organism   Bacillus inaquosorum strain A65.1     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2525683..2536114
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M1M80_RS12605 (M1M80_12605) sinI 2525874..2526047 (+) 174 WP_003226347.1 anti-repressor SinI family protein Regulator
  M1M80_RS12610 (M1M80_12610) sinR 2526081..2526416 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  M1M80_RS12615 (M1M80_12615) tasA 2526511..2527296 (-) 786 WP_003236939.1 biofilm matrix protein TasA -
  M1M80_RS12620 (M1M80_12620) - 2527360..2527932 (-) 573 WP_080429111.1 signal peptidase I -
  M1M80_RS12625 (M1M80_12625) tapA 2527916..2528680 (-) 765 WP_060399014.1 amyloid fiber anchoring/assembly protein TapA -
  M1M80_RS12630 (M1M80_12630) - 2528953..2529279 (+) 327 WP_029316858.1 YqzG/YhdC family protein -
  M1M80_RS12635 (M1M80_12635) - 2529321..2529500 (-) 180 WP_003236949.1 YqzE family protein -
  M1M80_RS12640 (M1M80_12640) comGG 2529571..2529945 (-) 375 WP_060399015.1 competence type IV pilus minor pilin ComGG Machinery gene
  M1M80_RS12645 (M1M80_12645) comGF 2529946..2530329 (-) 384 WP_060399016.1 competence type IV pilus minor pilin ComGF Machinery gene
  M1M80_RS12650 (M1M80_12650) comGE 2530355..2530699 (-) 345 WP_060399017.1 competence type IV pilus minor pilin ComGE Machinery gene
  M1M80_RS12655 (M1M80_12655) comGD 2530683..2531114 (-) 432 WP_060399018.1 competence type IV pilus minor pilin ComGD Machinery gene
  M1M80_RS12660 (M1M80_12660) comGC 2531104..2531400 (-) 297 WP_003236957.1 comG operon protein ComGC Machinery gene
  M1M80_RS12665 (M1M80_12665) comGB 2531414..2532451 (-) 1038 WP_060399019.1 competence type IV pilus assembly protein ComGB Machinery gene
  M1M80_RS12670 (M1M80_12670) comGA 2532438..2533508 (-) 1071 WP_060399020.1 competence protein ComGA Machinery gene
  M1M80_RS12675 (M1M80_12675) - 2533471..2533746 (-) 276 WP_060399021.1 hypothetical protein -
  M1M80_RS12680 (M1M80_12680) - 2533724..2534134 (-) 411 WP_060399022.1 CBS domain-containing protein -
  M1M80_RS12685 (M1M80_12685) corA 2534197..2535141 (-) 945 WP_003236968.1 magnesium transporter CorA -

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16073.61 Da        Isoelectric Point: 9.3120

>NTDB_id=682115 M1M80_RS12655 WP_060399018.1 2530683..2531114(-) (comGD) [Bacillus inaquosorum strain A65.1]
MNIKLNEEEGFTLLESLLVLSLASILLIAVFTTLPPAYDNTAVRQAAWQLKNDIMLAQQTAISSHQRTKILFQKKEYQLV
MGDIVIERPYTTGLSIETLTLKDRLEFNEKGHPNAGGKIRVKGHATYDITVYLGSGRVNVERK

Nucleotide


Download         Length: 432 bp        

>NTDB_id=682115 M1M80_RS12655 WP_060399018.1 2530683..2531114(-) (comGD) [Bacillus inaquosorum strain A65.1]
TTGAACATTAAATTAAACGAGGAGGAGGGATTTACCCTTTTAGAAAGCTTACTTGTGTTAAGTCTCGCCTCTATCCTCTT
GATTGCCGTGTTTACCACACTTCCTCCTGCTTATGACAATACAGCTGTCCGTCAGGCGGCTTGGCAGCTGAAAAACGATA
TTATGCTTGCACAGCAGACTGCTATTTCCAGTCATCAAAGAACAAAAATTCTCTTTCAGAAAAAAGAATATCAATTAGTC
ATGGGTGATATTGTGATTGAACGTCCGTATACAACGGGACTTTCTATAGAAACGCTGACATTAAAAGACCGTTTGGAATT
TAATGAGAAAGGGCACCCGAATGCAGGCGGAAAAATACGAGTAAAAGGACATGCCACTTATGACATCACAGTTTATTTAG
GAAGCGGGAGAGTCAATGTGGAGAGAAAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Bacillus subtilis subsp. subtilis str. 168

91.608

100

0.916