Detailed information    

insolico Bioinformatically predicted

Overview


Name   degS   Type   Regulator
Locus tag   M0696_RS17970 Genome accession   NZ_CP096590
Coordinates   3533493..3534650 (-) Length   385 a.a.
NCBI ID   WP_166847694.1    Uniprot ID   -
Organism   Bacillus rugosus strain A78.1     
Function   phosphorylation of DegU (predicted from homology)   
Competence regulation

Genomic Context


Location: 3528493..3539650
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M0696_RS17940 (M0696_17940) - 3528744..3529163 (-) 420 WP_166847705.1 TIGR03826 family flagellar region protein -
  M0696_RS17945 (M0696_17945) comFC 3529236..3529958 (-) 723 WP_166847702.1 ComF family protein Machinery gene
  M0696_RS17950 (M0696_17950) comFB 3529922..3530218 (-) 297 WP_166847699.1 late competence protein ComFB -
  M0696_RS17955 (M0696_17955) comFA 3530287..3531669 (-) 1383 WP_248602785.1 ATP-dependent helicase ComFA Machinery gene
  M0696_RS17960 (M0696_17960) - 3531777..3532622 (-) 846 WP_248602233.1 DegV family protein -
  M0696_RS17965 (M0696_17965) degU 3532721..3533410 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  M0696_RS17970 (M0696_17970) degS 3533493..3534650 (-) 1158 WP_166847694.1 two-component sensor histidine kinase DegS Regulator
  M0696_RS17975 (M0696_17975) - 3534866..3535519 (+) 654 WP_166847675.1 YigZ family protein -
  M0696_RS17980 (M0696_17980) - 3535519..3536643 (+) 1125 WP_222142129.1 LCP family protein -
  M0696_RS17985 (M0696_17985) - 3536716..3537792 (-) 1077 WP_222142130.1 MraY family glycosyltransferase -
  M0696_RS17990 (M0696_17990) - 3537937..3539130 (-) 1194 WP_222142456.1 glycosyltransferase family 1 protein -

Sequence


Protein


Download         Length: 385 a.a.        Molecular weight: 44985.81 Da        Isoelectric Point: 6.5309

>NTDB_id=681986 M0696_RS17970 WP_166847694.1 3533493..3534650(-) (degS) [Bacillus rugosus strain A78.1]
MNKTKMDSKVLDSILMKMLKTVDGSKDEVFQIGEQSRQQYEQLVEELKQIKQQVYEVIELGDKLEVQTRHARNRLSEVSR
NFHRFSEEEIRNAYEKAHKLQVELTMIQQREKQLRERRDDLERRLLGLQEIIERSESLVSQITVVLNYLNQDLREVGLLL
ADAQAKQDFGLRIIEAQEEERKRVSREIHDGPAQMLANVMMRSELIERIFRDRGAEDGFQEIKNLRQNVRNALYEVRRII
YDLRPMALDDLGLIPTLRKYLYTTEEYNGKVKIHFQCIGETEDRRLAPQFEVALFRLAQEAVSNALKHSESEEITVKVEI
TKDFVILMIKDNGKGFDLKEAKEKKNKSFGLLGMKERVDLLEGTMTIDSKIGLGTFIMIKVPLSL

Nucleotide


Download         Length: 1158 bp        

>NTDB_id=681986 M0696_RS17970 WP_166847694.1 3533493..3534650(-) (degS) [Bacillus rugosus strain A78.1]
ATGAATAAAACAAAGATGGATTCCAAAGTTCTGGATTCTATTTTGATGAAGATGCTGAAAACCGTTGACGGGAGCAAGGA
CGAGGTTTTTCAAATCGGGGAACAGTCACGCCAGCAGTATGAACAGCTGGTTGAAGAACTGAAACAAATTAAACAGCAGG
TGTATGAAGTTATCGAGCTTGGCGATAAACTTGAAGTGCAAACCCGCCATGCGAGAAACCGTTTATCCGAGGTCAGCCGC
AATTTTCATAGGTTCAGTGAAGAAGAAATCCGCAATGCTTACGAAAAAGCCCATAAGCTGCAGGTAGAATTGACGATGAT
CCAGCAGCGTGAGAAACAGCTGCGCGAACGCCGGGATGATTTAGAGCGAAGATTGTTAGGCCTTCAGGAAATCATTGAGC
GGTCTGAATCATTGGTAAGCCAAATAACAGTTGTGCTCAACTATTTGAATCAGGATTTGCGCGAGGTCGGATTGCTTCTG
GCTGATGCTCAGGCAAAACAGGATTTCGGCTTAAGAATTATTGAGGCACAGGAAGAAGAGCGAAAAAGAGTATCCAGAGA
AATTCATGACGGACCTGCTCAAATGCTGGCGAATGTTATGATGAGATCGGAATTAATCGAGCGGATTTTCCGTGACCGGG
GTGCTGAGGACGGATTCCAAGAAATTAAAAATCTCCGTCAAAATGTGCGGAATGCCCTTTACGAAGTGAGAAGGATTATA
TATGATTTAAGACCGATGGCCCTTGATGACCTAGGCCTGATTCCAACTTTAAGAAAATATCTATATACAACCGAGGAATA
TAACGGGAAGGTCAAAATACATTTTCAGTGCATTGGTGAAACAGAGGATAGGCGGCTTGCGCCTCAGTTTGAAGTTGCGC
TCTTCAGGCTCGCACAGGAAGCTGTGTCTAATGCGCTAAAGCATTCTGAATCTGAAGAAATTACAGTCAAAGTTGAGATC
ACAAAGGATTTTGTGATTTTAATGATAAAAGATAACGGCAAAGGGTTCGACCTGAAGGAAGCGAAAGAGAAGAAAAACAA
GTCATTCGGCTTGCTGGGCATGAAAGAAAGAGTAGATCTATTGGAAGGAACCATGACAATAGATTCCAAAATAGGTCTTG
GGACATTTATTATGATTAAGGTTCCGTTATCTCTTTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degS Bacillus subtilis subsp. subtilis str. 168

99.74

100

0.997