Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   M0696_RS17955 Genome accession   NZ_CP096590
Coordinates   3530287..3531669 (-) Length   460 a.a.
NCBI ID   WP_248602785.1    Uniprot ID   -
Organism   Bacillus rugosus strain A78.1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3525287..3536669
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M0696_RS17920 (M0696_17920) flgL 3525450..3526346 (-) 897 WP_248602232.1 flagellar hook-associated protein FlgL -
  M0696_RS17925 (M0696_17925) flgK 3526357..3527880 (-) 1524 WP_166847711.1 flagellar hook-associated protein FlgK -
  M0696_RS17930 (M0696_17930) flgN 3527899..3528381 (-) 483 WP_166847708.1 flagellar protein FlgN -
  M0696_RS17935 (M0696_17935) flgM 3528397..3528663 (-) 267 WP_014665557.1 flagellar biosynthesis anti-sigma factor FlgM -
  M0696_RS17940 (M0696_17940) - 3528744..3529163 (-) 420 WP_166847705.1 TIGR03826 family flagellar region protein -
  M0696_RS17945 (M0696_17945) comFC 3529236..3529958 (-) 723 WP_166847702.1 ComF family protein Machinery gene
  M0696_RS17950 (M0696_17950) comFB 3529922..3530218 (-) 297 WP_166847699.1 late competence protein ComFB -
  M0696_RS17955 (M0696_17955) comFA 3530287..3531669 (-) 1383 WP_248602785.1 ATP-dependent helicase ComFA Machinery gene
  M0696_RS17960 (M0696_17960) - 3531777..3532622 (-) 846 WP_248602233.1 DegV family protein -
  M0696_RS17965 (M0696_17965) degU 3532721..3533410 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  M0696_RS17970 (M0696_17970) degS 3533493..3534650 (-) 1158 WP_166847694.1 two-component sensor histidine kinase DegS Regulator
  M0696_RS17975 (M0696_17975) - 3534866..3535519 (+) 654 WP_166847675.1 YigZ family protein -
  M0696_RS17980 (M0696_17980) - 3535519..3536643 (+) 1125 WP_222142129.1 LCP family protein -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 52271.27 Da        Isoelectric Point: 9.6220

>NTDB_id=681984 M0696_RS17955 WP_248602785.1 3530287..3531669(-) (comFA) [Bacillus rugosus strain A78.1]
MIMPAEKNISFSKELQQTLQSRHLLRTELPFSDELIEWHIENGYIAAQNSISINKLGYKCNRCGQNDQRYFSFYYFSGKN
QMYCRSCVMMGRVSEDVPLYSWIEEDEPNWQPIKLKWDGKLSSGQQKAANVLIDAISKKEELLIWAVCGAGKTEMLFPGI
ESALNQGLRVCIATPRTDVVLELAPRLKAAFQGADISALYGGSDDKGRLSPLMISTTHQLLRYKDAFDVMIIDEVDAFPY
SADQTLQFGVQKARKKNSTLVYLSATPPKELKRKTLNGQLHSVRIPARHHRKPLPEPRFLWCGNWKKNLYRNKIPPAVKR
WIEFHVKEGRPVFLFVPSVTVLERAVACFKDVNCRTASVHAEDKQRKEKVQQFRDGQLDLLITTTILERGVTVPKVQTGV
LGAESPIFTESALVQIAGRTGRHKEHADGDVVFFHYGKTKSMLDARKHIKEMNDLAAKSN

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=681984 M0696_RS17955 WP_248602785.1 3530287..3531669(-) (comFA) [Bacillus rugosus strain A78.1]
CTGATTATGCCAGCTGAAAAGAACATTTCTTTTTCGAAAGAATTGCAGCAGACGCTTCAAAGCCGTCATTTGCTAAGAAC
TGAACTCCCATTTTCCGATGAGTTGATTGAATGGCATATCGAGAATGGATATATTGCCGCTCAAAACTCTATATCCATAA
ATAAACTGGGGTATAAATGTAATAGGTGCGGCCAAAATGATCAGCGGTATTTTTCTTTTTATTACTTCTCTGGAAAGAAT
CAGATGTATTGCCGTTCCTGTGTCATGATGGGCAGAGTGAGTGAGGATGTGCCTTTATATTCGTGGATAGAGGAAGATGA
ACCAAACTGGCAGCCTATAAAGCTGAAATGGGATGGCAAGCTCTCAAGCGGACAGCAAAAAGCCGCTAATGTCTTAATTG
ATGCAATATCAAAAAAAGAAGAGCTCCTCATCTGGGCAGTTTGCGGCGCTGGCAAAACAGAGATGTTATTCCCCGGTATA
GAATCCGCGTTAAATCAAGGGTTGCGTGTATGTATTGCGACACCACGCACCGATGTTGTATTAGAGCTTGCTCCGAGACT
CAAGGCTGCCTTTCAGGGCGCAGACATTTCAGCACTTTACGGAGGAAGCGATGACAAAGGGCGTTTATCTCCGCTTATGA
TTTCCACCACACATCAGCTTTTGCGATATAAAGACGCATTCGACGTTATGATTATTGACGAAGTTGATGCTTTTCCGTAT
TCTGCTGATCAAACTCTTCAATTCGGTGTTCAAAAAGCAAGAAAGAAGAACAGCACCCTTGTTTATTTAAGTGCAACACC
TCCTAAAGAATTAAAAAGAAAAACACTGAACGGACAGTTACATTCAGTTCGCATTCCAGCAAGACACCACCGGAAACCTT
TGCCTGAACCGCGCTTTCTATGGTGCGGAAACTGGAAAAAGAATTTATATCGAAATAAAATCCCGCCAGCGGTAAAAAGA
TGGATAGAGTTTCATGTGAAAGAAGGGAGGCCGGTTTTTTTGTTTGTTCCCTCCGTTACTGTTCTGGAAAGGGCAGTTGC
ATGCTTTAAAGATGTTAATTGCCGAACAGCGTCAGTGCATGCGGAAGATAAACAAAGGAAAGAGAAAGTACAGCAATTCA
GAGACGGTCAGCTTGATCTCTTAATCACAACAACAATATTAGAAAGAGGCGTCACGGTTCCAAAGGTGCAAACAGGTGTA
TTAGGGGCAGAATCGCCTATCTTTACGGAAAGCGCACTTGTTCAAATCGCAGGAAGAACCGGGCGGCATAAAGAGCATGC
GGACGGTGATGTCGTTTTCTTTCACTACGGAAAAACAAAGAGTATGCTAGATGCAAGAAAGCATATAAAGGAAATGAATG
ACTTGGCAGCAAAAAGTAATTGA

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(326-423)

Type III restriction enzyme, res subunit (ResIII)

(120-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

90.175

99.565

0.898