Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   M0696_RS17965 Genome accession   NZ_CP096590
Coordinates   3532721..3533410 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus rugosus strain A78.1     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3527721..3538410
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M0696_RS17930 (M0696_17930) flgN 3527899..3528381 (-) 483 WP_166847708.1 flagellar protein FlgN -
  M0696_RS17935 (M0696_17935) flgM 3528397..3528663 (-) 267 WP_014665557.1 flagellar biosynthesis anti-sigma factor FlgM -
  M0696_RS17940 (M0696_17940) - 3528744..3529163 (-) 420 WP_166847705.1 TIGR03826 family flagellar region protein -
  M0696_RS17945 (M0696_17945) comFC 3529236..3529958 (-) 723 WP_166847702.1 ComF family protein Machinery gene
  M0696_RS17950 (M0696_17950) comFB 3529922..3530218 (-) 297 WP_166847699.1 late competence protein ComFB -
  M0696_RS17955 (M0696_17955) comFA 3530287..3531669 (-) 1383 WP_248602785.1 ATP-dependent helicase ComFA Machinery gene
  M0696_RS17960 (M0696_17960) - 3531777..3532622 (-) 846 WP_248602233.1 DegV family protein -
  M0696_RS17965 (M0696_17965) degU 3532721..3533410 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  M0696_RS17970 (M0696_17970) degS 3533493..3534650 (-) 1158 WP_166847694.1 two-component sensor histidine kinase DegS Regulator
  M0696_RS17975 (M0696_17975) - 3534866..3535519 (+) 654 WP_166847675.1 YigZ family protein -
  M0696_RS17980 (M0696_17980) - 3535519..3536643 (+) 1125 WP_222142129.1 LCP family protein -
  M0696_RS17985 (M0696_17985) - 3536716..3537792 (-) 1077 WP_222142130.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=681985 M0696_RS17965 WP_003219701.1 3532721..3533410(-) (degU) [Bacillus rugosus strain A78.1]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=681985 M0696_RS17965 WP_003219701.1 3532721..3533410(-) (degU) [Bacillus rugosus strain A78.1]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGCGACGACGGAGACGAAGCGGCTCGTATTGTAGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCAAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCTCTGAAAACAGGAGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTTGCCGAGGGAGGTTCTTACCTTCATCCGAAGGTTACTCACA
ATCTCGTTAACGAATTCCGCCGTCTTGCAACAAGCGGAGTTTCTGCACACCCTCAGCACGAGGTCTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGACGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGTATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTCAAAAACCATGTGAGCAATATTTTGCAAAAAATGAATGTAAACGACCGGA
CGCAAGCTGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1