Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   M1B70_RS10085 Genome accession   NZ_CP096571
Coordinates   2033539..2034060 (-) Length   173 a.a.
NCBI ID   WP_002829316.1    Uniprot ID   A0AAN5YAY2
Organism   Pediococcus acidilactici strain BB2-4M     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2028539..2039060
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M1B70_RS10065 (M1B70_10065) dnaB 2029158..2030555 (-) 1398 WP_002829312.1 replicative DNA helicase -
  M1B70_RS10070 (M1B70_10070) rplI 2030605..2031057 (-) 453 WP_002830768.1 50S ribosomal protein L9 -
  M1B70_RS10075 (M1B70_10075) - 2031063..2033060 (-) 1998 WP_002829314.1 DHH family phosphoesterase -
  M1B70_RS10080 (M1B70_10080) rpsR 2033273..2033509 (-) 237 WP_002829315.1 30S ribosomal protein S18 -
  M1B70_RS10085 (M1B70_10085) ssb 2033539..2034060 (-) 522 WP_002829316.1 single-stranded DNA-binding protein Machinery gene
  M1B70_RS10090 (M1B70_10090) rpsF 2034097..2034384 (-) 288 WP_002829317.1 30S ribosomal protein S6 -
  M1B70_RS10095 (M1B70_10095) gyrA 2034570..2037089 (-) 2520 WP_128211352.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18874.39 Da        Isoelectric Point: 4.6207

>NTDB_id=681807 M1B70_RS10085 WP_002829316.1 2033539..2034060(-) (ssb) [Pediococcus acidilactici strain BB2-4M]
MINRAVLVGRLTRDPELRYTSSGAAVVSFTVAVNRQFTNSQGEREADFINCVMWRKAAENFANFTRKGSLVGIDGRIQTR
SYENQQGQRVYVTEVVADNFSLLESRSASERRQENEGFNNGQSAPSQSSAGNPFDSGQANNNGAASQPNNSNPNDPFANG
GQSIDISDDDLPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=681807 M1B70_RS10085 WP_002829316.1 2033539..2034060(-) (ssb) [Pediococcus acidilactici strain BB2-4M]
ATGATTAATCGTGCCGTACTAGTTGGACGTTTAACAAGAGATCCTGAACTACGATATACAAGTAGTGGCGCTGCCGTAGT
TAGTTTTACCGTGGCGGTTAACCGTCAGTTTACTAACTCACAGGGTGAACGCGAAGCGGATTTCATCAACTGTGTAATGT
GGCGGAAAGCGGCGGAAAACTTCGCCAACTTCACGCGCAAGGGCTCTCTAGTAGGTATCGACGGTCGGATCCAAACCCGT
TCGTACGAAAACCAACAAGGACAACGAGTATACGTTACCGAAGTTGTTGCGGATAACTTCTCACTTCTTGAATCCCGTTC
GGCTTCCGAACGCCGTCAAGAAAATGAAGGCTTCAACAACGGTCAATCTGCCCCTTCACAATCATCTGCTGGAAATCCTT
TTGACAGTGGTCAAGCGAATAACAATGGTGCTGCATCGCAGCCTAACAATTCGAACCCGAATGATCCGTTTGCAAATGGC
GGACAGTCAATTGATATTTCTGACGATGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

69.318

100

0.705
  ssbA Bacillus subtilis subsp. subtilis str. 168

60

100

0.607
  ssbB Bacillus subtilis subsp. subtilis str. 168

61.321

61.272

0.376