Detailed information NTG0680418

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: M0M42_RS14285
• Genome accession: NZ_CP096208
• Coordinates: 3064121..3066346 (-)
• Length: 741 a.a.
• NCBI ID: WP_248492955.1
• Uniprot ID: -
• Organism: Pseudomonas knackmussii strain B09-2
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3059121..3071346

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
M0M42_RS14250 (M0M42_14250)	murB	3059515..3060534 (-)	1020	WP_248492950.1	UDP-N-acetylmuramate dehydrogenase	-
M0M42_RS14255 (M0M42_14255)	-	3060531..3060995 (-)	465	WP_248492951.1	low molecular weight protein-tyrosine-phosphatase	-
M0M42_RS14260 (M0M42_14260)	kdsB	3060998..3061762 (-)	765	WP_248492952.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
M0M42_RS14265 (M0M42_14265)	-	3061759..3061944 (-)	186	WP_222908926.1	Trm112 family protein	-
M0M42_RS14270 (M0M42_14270)	lpxK	3061997..3062992 (-)	996	WP_248492953.1	tetraacyldisaccharide 4'-kinase	-
M0M42_RS14275 (M0M42_14275)	-	3062992..3063420 (-)	429	WP_248492954.1	biopolymer transporter ExbD	-
M0M42_RS14280 (M0M42_14280)	exbB	3063417..3064049 (-)	633	WP_222912099.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
M0M42_RS14285 (M0M42_14285)	comA	3064121..3066346 (-)	2226	WP_248492955.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
M0M42_RS14290 (M0M42_14290)	-	3066525..3067040 (+)	516	WP_222908930.1	DUF2062 domain-containing protein	-
M0M42_RS14295 (M0M42_14295)	-	3067049..3068296 (-)	1248	WP_248492956.1	lipoprotein-releasing ABC transporter permease subunit	-
M0M42_RS14300 (M0M42_14300)	lolD	3068296..3068994 (-)	699	WP_248497423.1	lipoprotein-releasing ABC transporter ATP-binding protein LolD	-
M0M42_RS14305 (M0M42_14305)	-	3069002..3070249 (-)	1248	WP_248492957.1	lipoprotein-releasing ABC transporter permease subunit	-
M0M42_RS14310 (M0M42_14310)	-	3070350..3070922 (+)	573	WP_248492958.1	PilZ domain-containing protein	-
M0M42_RS14315 (M0M42_14315)	-	3070926..3071231 (+)	306	WP_222908934.1	phosphodiesterase	-

Sequence

Protein

• Length: 741 a.a.
• Molecular weight: 80553.04 Da
• Isoelectric Point: 7.6083

>NTDB_id=680418 M0M42_RS14285 WP_248492955.1 3064121..3066346(-) (comA) [Pseudomonas knackmussii strain B09-2]
MRTAMLALAAGLLLLRFLPQLPPVSMILVMLVAGLALLPFRWRAIGCFLCGLGWACLHAHWAVDDRLPTELDGRTFWLEG
QVTGLPDVRGGVVRFELVDVSSRHEGLPSRLRLAWYGGPEVRSGERWRLAAKLKKPRGLVNPHAFDYEAWLLARRIGASG
TIKAGSRLSTPDGGEAWRDQLRHRLLSVDAHGRSGAIAALVVGDDSGLSATDWRVLQDTGTVHLMVISGQHVGMLAGLLY
GMVALMARWGPWPRRVPWLPCACGLALSGALAYGWLAGFDVPVQRALVMVALVLLWRLRYRHLGVWLPLLIALDGVLLID
PLVGLQSGFWLSFSAVALLALIFRGRLGASSWWEVLGRAQWSMALGLLPVLLALGLPVSLSGPIANLFAVPLVSVLIVPL
SLAGTSLLWLPMAGESLLWLAGGMLSVLFDALHWLAGWQSAWLPVSLPLWGWLLVFIGMMVTLLPAGVPFRALGVVLLAP
LLFPPADKPSPGEADLWVFDVGQGLAVLVRTGTHALLYDAGPRYGDFDIGERVVFPSMRTLGVAELDLLVLSHADSDHAG
GAQAIQRLMPVGQVLSGEPGRLPAALNAETCRSGEQWEWDSVSFRLWRWSEAGEGNQSSCVLMVEANGERLLLTGDIDVP
AEQALLTENMPLDARWLLVPHHGSRSSSSTEFIDAVSAEGALVSRSLHNAFGHPHPDVVRRLNASGARVYDTAEQGALHI
RLGRFEPVRGSRAQQRFWQEK

Nucleotide

• Length: 2226 bp

>NTDB_id=680418 M0M42_RS14285 WP_248492955.1 3064121..3066346(-) (comA) [Pseudomonas knackmussii strain B09-2]
ATGCGTACAGCGATGCTGGCGCTGGCGGCAGGCCTCTTACTGCTGCGCTTCTTGCCGCAACTTCCGCCTGTGTCGATGAT
CCTCGTGATGCTTGTCGCGGGCTTGGCCTTGTTGCCGTTCCGCTGGCGAGCGATCGGTTGTTTTCTTTGCGGCCTTGGCT
GGGCTTGTTTACACGCTCACTGGGCGGTGGATGATCGTCTCCCTACGGAACTTGACGGGCGTACATTCTGGCTCGAGGGC
CAAGTAACTGGTTTGCCTGACGTTCGTGGCGGTGTGGTGCGCTTCGAGCTCGTCGACGTATCGTCCCGGCATGAGGGCTT
GCCGTCACGCCTTCGTCTGGCGTGGTACGGAGGGCCGGAAGTTCGGTCGGGAGAGCGATGGCGGCTCGCCGCCAAGCTGA
AAAAACCCCGCGGTCTGGTCAATCCACACGCGTTCGATTATGAGGCCTGGCTCCTGGCTCGGCGCATTGGCGCGAGCGGC
ACGATCAAGGCTGGCTCGAGGCTATCGACTCCAGACGGGGGCGAGGCGTGGCGCGATCAGCTGCGCCACCGTTTGTTGTC
CGTTGACGCACATGGCCGCTCAGGCGCAATCGCCGCGTTAGTAGTAGGAGATGACAGCGGCCTGTCCGCGACCGATTGGC
GGGTCCTTCAGGACACCGGCACGGTGCATCTCATGGTGATTTCCGGCCAGCATGTCGGCATGCTGGCCGGCCTGCTCTAC
GGTATGGTCGCATTGATGGCTCGCTGGGGCCCTTGGCCCCGACGCGTTCCCTGGTTGCCCTGCGCTTGCGGTTTGGCGCT
GTCCGGCGCGCTTGCGTACGGCTGGCTGGCGGGCTTCGACGTACCGGTCCAGCGAGCGTTGGTCATGGTCGCGCTGGTGC
TTCTGTGGCGCTTGCGGTATCGACACCTCGGCGTCTGGCTACCCTTGCTGATTGCGCTTGATGGCGTGCTGTTGATCGAT
CCGCTGGTGGGTCTGCAGTCAGGGTTCTGGTTGTCATTCAGTGCAGTTGCGTTGCTGGCGCTGATCTTTCGAGGACGTCT
TGGCGCGAGCTCGTGGTGGGAGGTGCTAGGCCGTGCGCAGTGGAGCATGGCGCTCGGCCTGTTGCCGGTCTTGCTTGCGT
TGGGGCTGCCAGTGAGTCTCAGCGGGCCGATCGCCAACCTGTTTGCAGTGCCGTTGGTCAGCGTGCTGATCGTGCCGCTC
TCGCTGGCGGGGACCTCGCTATTATGGTTGCCGATGGCAGGCGAGTCGCTACTGTGGCTAGCAGGTGGGATGCTGTCGGT
GTTATTCGATGCGTTGCATTGGCTGGCTGGCTGGCAATCGGCTTGGCTTCCGGTCTCCTTGCCACTGTGGGGATGGTTGC
TGGTTTTCATCGGGATGATGGTCACGCTACTGCCAGCGGGTGTGCCGTTTCGGGCGTTGGGCGTGGTGCTTCTTGCCCCC
TTGCTGTTTCCGCCAGCCGACAAGCCTTCACCCGGCGAGGCGGATTTATGGGTGTTCGATGTAGGGCAGGGATTGGCAGT
GCTGGTGCGCACAGGTACCCATGCATTGCTCTACGACGCGGGGCCCCGTTATGGCGACTTCGATATCGGCGAGCGGGTTG
TATTTCCATCGATGCGAACATTGGGTGTGGCCGAGCTCGATCTACTGGTTTTGAGCCATGCCGATAGCGACCACGCCGGC
GGCGCTCAGGCAATTCAGCGGCTTATGCCGGTCGGGCAGGTGCTGAGCGGCGAACCGGGAAGGCTACCCGCGGCGTTGAA
CGCCGAAACGTGCCGCTCTGGAGAGCAGTGGGAGTGGGACTCGGTTAGCTTCAGGCTTTGGCGATGGTCGGAGGCAGGAG
AGGGCAACCAGTCCTCATGTGTACTCATGGTCGAAGCCAATGGCGAACGTCTGTTGCTCACTGGGGATATCGATGTGCCG
GCTGAGCAGGCGCTGCTAACAGAAAATATGCCCCTTGATGCCCGCTGGTTATTGGTCCCTCACCATGGCAGTCGCAGCTC
GTCGTCAACCGAGTTCATCGACGCGGTGAGCGCGGAGGGCGCGCTCGTTTCGCGCAGCTTGCATAATGCGTTTGGGCATC
CGCATCCGGATGTCGTCCGACGCCTGAACGCTTCCGGCGCTCGCGTCTATGACACGGCCGAGCAGGGGGCGCTGCACATC
CGTCTCGGACGTTTCGAACCCGTTCGCGGATCGCGTGCTCAACAGCGGTTCTGGCAGGAAAAATGA

Domains

Predicted by InterproScan.

• Competence protein (Competence) (200-465)

• Metallo-beta-lactamase superfamily (Lactamase_B) (501-682)

• Domain of unknown function (DUF4131) (DUF4131) (19-167)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	71.111	97.166	0.691
comA	Ralstonia pseudosolanacearum GMI1000	34.923	100	0.395