Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   M0M42_RS14280 Genome accession   NZ_CP096208
Coordinates   3063417..3064049 (-) Length   210 a.a.
NCBI ID   WP_222912099.1    Uniprot ID   -
Organism   Pseudomonas knackmussii strain B09-2     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3058417..3069049
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M0M42_RS14250 (M0M42_14250) murB 3059515..3060534 (-) 1020 WP_248492950.1 UDP-N-acetylmuramate dehydrogenase -
  M0M42_RS14255 (M0M42_14255) - 3060531..3060995 (-) 465 WP_248492951.1 low molecular weight protein-tyrosine-phosphatase -
  M0M42_RS14260 (M0M42_14260) kdsB 3060998..3061762 (-) 765 WP_248492952.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  M0M42_RS14265 (M0M42_14265) - 3061759..3061944 (-) 186 WP_222908926.1 Trm112 family protein -
  M0M42_RS14270 (M0M42_14270) lpxK 3061997..3062992 (-) 996 WP_248492953.1 tetraacyldisaccharide 4'-kinase -
  M0M42_RS14275 (M0M42_14275) - 3062992..3063420 (-) 429 WP_248492954.1 biopolymer transporter ExbD -
  M0M42_RS14280 (M0M42_14280) exbB 3063417..3064049 (-) 633 WP_222912099.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  M0M42_RS14285 (M0M42_14285) comA 3064121..3066346 (-) 2226 WP_248492955.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  M0M42_RS14290 (M0M42_14290) - 3066525..3067040 (+) 516 WP_222908930.1 DUF2062 domain-containing protein -
  M0M42_RS14295 (M0M42_14295) - 3067049..3068296 (-) 1248 WP_248492956.1 lipoprotein-releasing ABC transporter permease subunit -
  M0M42_RS14300 (M0M42_14300) lolD 3068296..3068994 (-) 699 WP_248497423.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 22682.95 Da        Isoelectric Point: 7.9111

>NTDB_id=680417 M0M42_RS14280 WP_222912099.1 3063417..3064049(-) (exbB) [Pseudomonas knackmussii strain B09-2]
MWELVKAGGWIMLPIILCSIAAAGIIAERLWTLRPSRVTPSHLLGQVWKWIKDKKLSNQKLKELRADSPLGEILAAGLAN
SKHGREIMKECIEEAAARVVHDLERYLNALGTIAGIAPLLGLLGTVLGMIEIFSAFMGAGMANAPLLASGISKALITTAA
GLMVGIPALFFHRFLLRRVEELVVGMEQEAIKLVEVVQGDRDVDLGEGKA

Nucleotide


Download         Length: 633 bp        

>NTDB_id=680417 M0M42_RS14280 WP_222912099.1 3063417..3064049(-) (exbB) [Pseudomonas knackmussii strain B09-2]
GTGTGGGAGCTGGTTAAAGCAGGCGGCTGGATAATGCTGCCAATCATTCTGTGTTCCATCGCTGCCGCCGGCATCATCGC
TGAAAGGCTGTGGACCCTTCGGCCGAGCCGAGTAACCCCGTCGCACTTGCTTGGTCAGGTGTGGAAATGGATCAAGGATA
AGAAACTCAGTAACCAGAAGCTCAAAGAGCTGCGTGCTGATTCACCGTTGGGTGAGATTTTGGCTGCCGGTCTAGCCAAC
TCCAAGCATGGGCGGGAGATCATGAAGGAGTGCATCGAGGAAGCGGCGGCACGGGTCGTTCATGATCTCGAGCGCTACCT
CAATGCGCTGGGCACCATCGCCGGCATTGCGCCGTTACTCGGCCTTCTCGGCACCGTGCTCGGGATGATTGAAATCTTCA
GCGCATTCATGGGCGCTGGTATGGCTAACGCCCCGTTACTTGCCTCGGGTATTTCGAAAGCGCTCATCACCACTGCCGCG
GGCCTGATGGTCGGCATTCCTGCGTTGTTCTTCCACCGCTTTTTGCTGCGTCGAGTCGAAGAGCTGGTAGTCGGAATGGA
GCAGGAAGCCATCAAGCTGGTCGAGGTGGTACAGGGTGACCGTGATGTCGATTTGGGTGAGGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

96.19

100

0.962