Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   MTO69_RS12415 Genome accession   NZ_CP096199
Coordinates   2717636..2718268 (+) Length   210 a.a.
NCBI ID   WP_004410522.1    Uniprot ID   A0A240EMA6
Organism   Vibrio sinaloensis strain YA2     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2712636..2723268
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MTO69_RS12390 (MTO69_12390) - 2712788..2714710 (+) 1923 WP_248329598.1 ABC transporter ATP-binding protein -
  MTO69_RS12395 (MTO69_12395) - 2714707..2715186 (+) 480 WP_248329600.1 TIGR02444 family protein -
  MTO69_RS12400 (MTO69_12400) - 2715201..2716178 (+) 978 WP_248329602.1 hydrolase -
  MTO69_RS12405 (MTO69_12405) - 2716220..2716432 (+) 213 WP_248329604.1 YheU family protein -
  MTO69_RS12410 (MTO69_12410) - 2716524..2717393 (+) 870 WP_248329606.1 phosphoribulokinase -
  MTO69_RS12415 (MTO69_12415) crp 2717636..2718268 (+) 633 WP_004410522.1 cAMP-activated global transcriptional regulator CRP Regulator
  MTO69_RS12420 (MTO69_12420) - 2718509..2719300 (-) 792 WP_248329608.1 DUF1338 domain-containing protein -
  MTO69_RS12425 (MTO69_12425) astD 2719446..2720903 (-) 1458 WP_248329610.1 succinylglutamate-semialdehyde dehydrogenase -
  MTO69_RS12430 (MTO69_12430) astA 2720921..2721940 (-) 1020 WP_248329612.1 arginine N-succinyltransferase -
  MTO69_RS12435 (MTO69_12435) - 2722047..2723261 (-) 1215 WP_248329614.1 aspartate aminotransferase family protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23596.37 Da        Isoelectric Point: 7.4009

>NTDB_id=680267 MTO69_RS12415 WP_004410522.1 2717636..2718268(+) (crp) [Vibrio sinaloensis strain YA2]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEED
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSAQMASRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=680267 MTO69_RS12415 WP_004410522.1 2717636..2718268(+) (crp) [Vibrio sinaloensis strain YA2]
ATGGTTCTAGGTAAACCTCAAACCGACCCTACATTAGAGTGGTTCCTTTCACATTGTCATATTCATAAGTACCCATCAAA
AAGCACGCTAATTCACGCGGGCGAGAAAGCCGAAACTTTGTACTACATCGTTAAAGGTTCTGTAGCGGTTCTTATCAAAG
ACGAAGAAGGTAAGGAAATGATCCTTTCTTACCTAAACCAAGGCGACTTTATCGGTGAACTTGGCCTATTCGAAGAAGAT
CAAGAACGTACCGCTTGGGTTCGTGCAAAATCTCCTTGTGAAGTAGCGGAAATCTCATTCAAGAAGTTCCGTCAGCTGAT
CCAAGTTAACCCAGATATCCTAATGCGCCTATCAGCTCAAATGGCAAGTCGTCTACAAGTGACCAGCCAAAAAGTGGGCG
ACCTTGCCTTCCTTGACGTGACAGGCCGTATCGCGCAAACGCTACTTAACCTAGCGAAGCAACCAGATGCAATGACCCAC
CCAGACGGCATGCAAATCAAGATCACCCGTCAAGAAATCGGTCAAATCGTTGGCTGTTCTCGTGAAACCGTTGGTCGTAT
CTTGAAGATGCTTGAAGAGCAAAACCTGATCTCTGCTCACGGTAAGACTATCGTGGTTTACGGTACGCGTTAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A240EMA6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

97.619

100

0.976
  crp Haemophilus influenzae Rd KW20

75

97.143

0.729
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467