Detailed information NTG0680263

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: MTO69_RS11465
• Genome accession: NZ_CP096199
• Coordinates: 2552517..2553386 (+)
• Length: 289 a.a.
• NCBI ID: WP_248329363.1
• Uniprot ID: -
• Organism: Vibrio sinaloensis strain YA2
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2547517..2558386

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MTO69_RS11445 (MTO69_11445)	nadC	2548065..2548952 (+)	888	WP_248329355.1	carboxylating nicotinate-nucleotide diphosphorylase	-
MTO69_RS11450 (MTO69_11450)	-	2549166..2549561 (+)	396	WP_248329357.1	pilin	-
MTO69_RS11455 (MTO69_11455)	pilB	2549561..2551243 (+)	1683	WP_248329359.1	type IV-A pilus assembly ATPase PilB	Machinery gene
MTO69_RS11460 (MTO69_11460)	-	2551250..2552479 (+)	1230	WP_248329361.1	type II secretion system F family protein	-
MTO69_RS11465 (MTO69_11465)	pilD	2552517..2553386 (+)	870	WP_248329363.1	A24 family peptidase	Machinery gene
MTO69_RS11470 (MTO69_11470)	coaE	2553388..2553996 (+)	609	WP_248329365.1	dephospho-CoA kinase	-
MTO69_RS11475 (MTO69_11475)	zapD	2554031..2554771 (+)	741	WP_248329367.1	cell division protein ZapD	-
MTO69_RS11480 (MTO69_11480)	yacG	2554831..2555025 (+)	195	WP_248329369.1	DNA gyrase inhibitor YacG	-
MTO69_RS11485 (MTO69_11485)	rplS	2555285..2555638 (-)	354	WP_045977783.1	50S ribosomal protein L19	-
MTO69_RS11490 (MTO69_11490)	trmD	2555680..2556423 (-)	744	WP_239876866.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
MTO69_RS11495 (MTO69_11495)	rimM	2556449..2556997 (-)	549	WP_248329371.1	ribosome maturation factor RimM	-
MTO69_RS11500 (MTO69_11500)	rpsP	2557027..2557275 (-)	249	WP_005438039.1	30S ribosomal protein S16	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32630.73 Da
• Isoelectric Point: 7.2548

>NTDB_id=680263 MTO69_RS11465 WP_248329363.1 2552517..2553386(+) (pilD) [Vibrio sinaloensis strain YA2]
MDIFSYYPWLFPALATIFGLVIGSFLNVVIHRLPLMMEREWRQECAESFPEYQIEPPQGTFNLSIPRSRCPYCQHPVAIG
DNIPLLGWLRLKGRCRHCSEKISARYPLVECLSATLSFILAYQLGFSYFSLALLLFTFTLIAATFIDLDTLLLPDQLTLP
LTWAGITLALVNISPVSLQDSVIGAIAGYLCLWSVYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQHLPLIILLSSIVGL
IFGLIQLRLKRQGIDKAFPFGPYLAIAGWISMMWGDAIMSWYLHNWLGI

Nucleotide

• Length: 870 bp

>NTDB_id=680263 MTO69_RS11465 WP_248329363.1 2552517..2553386(+) (pilD) [Vibrio sinaloensis strain YA2]
ATGGATATTTTTAGTTACTACCCATGGCTGTTTCCAGCTCTAGCCACTATTTTTGGCCTTGTTATCGGCAGCTTTCTTAA
TGTGGTGATCCACCGCCTGCCTCTGATGATGGAGCGAGAATGGCGCCAAGAGTGCGCAGAAAGCTTTCCCGAGTACCAAA
TTGAGCCACCTCAAGGAACGTTTAACTTAAGCATCCCTAGATCTCGTTGCCCTTATTGCCAACACCCCGTCGCCATTGGT
GACAATATTCCCTTACTCGGTTGGTTGCGCCTTAAAGGTCGATGTCGTCATTGCTCAGAAAAAATCAGTGCTCGTTACCC
GCTGGTCGAGTGTCTGAGCGCGACTCTCAGCTTTATCCTGGCCTATCAGCTTGGTTTTAGTTACTTCTCGCTGGCGCTAC
TGCTGTTCACTTTTACCCTGATTGCGGCCACCTTCATCGACCTTGATACCCTATTACTGCCCGACCAACTGACTTTGCCT
CTCACTTGGGCCGGCATCACTCTCGCGCTGGTTAATATCAGTCCTGTTTCTCTGCAAGACTCGGTGATTGGCGCGATAGC
AGGGTATTTATGTTTGTGGAGCGTTTACTGGCTGTTTAAATTGCTCACTGGGAAAGAAGGCATGGGCTATGGCGACTTTA
AGTTGCTTGCCGCCTTGGGGGCTTGGCTTGGGTGGCAACATCTGCCTTTGATCATCTTGCTTTCTTCTATCGTCGGGCTG
ATTTTTGGCCTGATTCAGTTGCGATTGAAGCGTCAAGGCATCGATAAAGCATTCCCGTTCGGCCCCTATCTGGCTATTGC
CGGGTGGATAAGCATGATGTGGGGCGATGCGATCATGTCGTGGTATTTGCATAATTGGTTAGGAATCTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (135-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-123)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	71.28	100	0.713
pilD	Vibrio cholerae strain A1552	69.097	99.654	0.689
pilD	Acinetobacter nosocomialis M2	49.123	98.616	0.484
pilD	Acinetobacter baumannii D1279779	48.772	98.616	0.481
pilD	Neisseria gonorrhoeae MS11	45.263	98.616	0.446