Detailed information    

insolico Bioinformatically predicted

Overview

Name   ideA   Type   Regulator
Locus tag   MZ182_RS15100 Genome accession   NZ_CP096169
Coordinates   3367072..3367755 (+) Length   227 a.a.
NCBI ID   WP_129980180.1    Uniprot ID   -
Organism   Shewanella sp. JNE2     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 3362072..3372755
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MZ182_RS15070 (MZ182_15070) - 3363032..3364048 (-) 1017 WP_248065731.1 YqaJ viral recombinase family protein -
  MZ182_RS15075 (MZ182_15075) - 3364109..3364252 (-) 144 WP_015066581.1 hypothetical protein -
  MZ182_RS15080 (MZ182_15080) bet 3364335..3365153 (-) 819 WP_000414662.1 phage recombination protein Bet -
  MZ182_RS15085 (MZ182_15085) - 3365233..3365652 (-) 420 WP_012368368.1 single-stranded DNA-binding protein -
  MZ182_RS15090 (MZ182_15090) - 3365668..3365994 (-) 327 WP_048608521.1 hypothetical protein -
  MZ182_RS15095 (MZ182_15095) - 3366361..3366963 (+) 603 WP_248065730.1 hypothetical protein -
  MZ182_RS15100 (MZ182_15100) ideA 3367072..3367755 (+) 684 WP_129980180.1 endonuclease Regulator
  MZ182_RS15105 (MZ182_15105) - 3368164..3370203 (-) 2040 WP_004249372.1 ATP-binding protein -
  MZ182_RS15110 (MZ182_15110) - 3370200..3371618 (-) 1419 WP_248065729.1 SIR2 family protein -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 26482.50 Da        Isoelectric Point: 7.2409

>NTDB_id=680197 MZ182_RS15100 WP_129980180.1 3367072..3367755(+) (ideA) [Shewanella sp. JNE2]
MNRTNFFVTFFIALFAIPAIAEHPTSFSQAKRFAREIYQDNQSTFYCGCSYSNDGAIDAASCGYEPRKQPKRGERLEWEH
VVSAWEIGHQRQCWQNGGRRNCEKNDPEFSKMVSDLHNLVPSVGELNGDRSNFRFGMIPNEPRSYGQCDFEVDFKDRRAE
PPANRQGDIARIYFYMRDQYGLRLSRQQTQLFEAWSRMDPVDEWEKVRDFKIKTIQGNSNCHVSNSC

Nucleotide


Download         Length: 684 bp        

>NTDB_id=680197 MZ182_RS15100 WP_129980180.1 3367072..3367755(+) (ideA) [Shewanella sp. JNE2]
ATGAATAGAACTAATTTTTTCGTTACTTTCTTTATAGCGTTATTCGCTATACCTGCAATTGCAGAACACCCCACATCGTT
CAGTCAGGCAAAACGATTTGCCCGAGAAATTTACCAAGACAACCAGAGTACGTTTTACTGTGGATGTAGCTATAGCAATG
ATGGTGCGATTGATGCTGCATCTTGCGGATATGAACCAAGAAAGCAACCGAAACGAGGTGAACGCTTAGAGTGGGAACAT
GTAGTCTCAGCTTGGGAAATTGGCCATCAACGCCAATGCTGGCAAAATGGTGGTCGTCGGAACTGCGAAAAGAATGATCC
TGAGTTTTCTAAAATGGTTTCGGATCTCCATAACCTCGTACCATCTGTAGGAGAGCTCAATGGGGATAGGTCAAATTTTC
GATTTGGCATGATTCCGAATGAACCAAGATCCTATGGTCAATGTGATTTCGAAGTTGATTTCAAAGACCGTCGAGCAGAA
CCACCAGCTAACCGTCAGGGTGATATTGCTAGAATTTATTTCTACATGCGAGATCAATACGGCCTAAGACTCAGTAGGCA
ACAAACTCAGCTATTTGAAGCTTGGTCAAGAATGGACCCTGTTGACGAATGGGAAAAAGTGCGTGATTTTAAGATTAAAA
CTATTCAAGGTAACTCTAACTGCCATGTGTCAAATAGCTGTTAA

Domains

Predicted by InterProScan.

Endonuclease I (Endonuclease_1)

(53-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ideA Vibrio cholerae O1 str. 2010EL-1786

93.833

100

0.938
  dns Vibrio parahaemolyticus RIMD 2210633

52.402

100

0.529
  dns Aliivibrio fischeri ES114

51.739

100

0.524
  dns Vibrio cholerae strain A1552

51.556

99.119

0.511