Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   MZ097_RS02890 Genome accession   NZ_CP096166
Coordinates   628313..629023 (+) Length   236 a.a.
NCBI ID   WP_248084439.1    Uniprot ID   -
Organism   Shewanella sp. JNE7     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 623313..634023
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MZ097_RS02880 (MZ097_02880) uvrA 623563..626439 (-) 2877 WP_011790779.1 excinuclease ABC subunit UvrA -
  MZ097_RS02885 (MZ097_02885) - 626838..628205 (+) 1368 WP_115016233.1 MFS transporter -
  MZ097_RS02890 (MZ097_02890) ssb 628313..629023 (+) 711 WP_248084439.1 single-stranded DNA-binding protein Machinery gene
  MZ097_RS02895 (MZ097_02895) - 629142..629720 (+) 579 WP_248084440.1 anthranilate synthase component II -
  MZ097_RS02900 (MZ097_02900) - 629887..632367 (+) 2481 WP_248084441.1 S9 family peptidase -
  MZ097_RS02905 (MZ097_02905) - 632555..633700 (+) 1146 WP_011918636.1 HDOD domain-containing protein -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 25373.93 Da        Isoelectric Point: 5.2341

>NTDB_id=680161 MZ097_RS02890 WP_248084439.1 628313..629023(+) (ssb) [Shewanella sp. JNE7]
MASRGVNKVILVGNLGQDPEVRYMPNGNAVANITVATSESWKDQQGQQQERTEWHRVVLFGKLAEITGEYLRKGSQVYLE
GKLQTRKWKDQSGQDRYSTEVVIDQSGSMQMLGSRGQGAQAQGAPMGGGMPQNAGYQSAPQQAAPAQNQYAPAPQAAPAY
QAPAQQQYAPPAPAQQQGYGQPQAQQSQQGGYAPKPQAAPAPAYQAPAAPAQRPAPQPQQNFTPDLDDGWDDDIPF

Nucleotide


Download         Length: 711 bp        

>NTDB_id=680161 MZ097_RS02890 WP_248084439.1 628313..629023(+) (ssb) [Shewanella sp. JNE7]
ATGGCCAGTCGTGGTGTTAACAAGGTAATTTTGGTTGGCAATTTGGGACAAGATCCAGAAGTGCGTTATATGCCAAACGG
TAATGCAGTCGCAAACATTACAGTAGCGACTAGCGAATCGTGGAAAGACCAACAGGGTCAACAGCAAGAGCGCACCGAAT
GGCACCGTGTGGTTCTGTTCGGCAAATTAGCTGAAATTACAGGTGAATATTTACGTAAAGGTTCACAGGTTTATCTTGAA
GGTAAACTGCAAACCCGTAAGTGGAAAGACCAAAGCGGTCAAGATCGCTACAGCACTGAAGTGGTTATCGATCAAAGCGG
TAGCATGCAAATGCTAGGTAGCCGTGGTCAAGGTGCTCAAGCACAAGGTGCGCCAATGGGCGGCGGTATGCCACAAAATG
CAGGCTATCAGTCAGCGCCTCAGCAAGCCGCTCCTGCACAAAATCAGTATGCGCCAGCGCCTCAAGCTGCACCTGCTTAC
CAAGCCCCTGCGCAGCAACAATATGCTCCGCCAGCACCTGCTCAGCAGCAAGGTTATGGTCAGCCACAGGCTCAACAATC
ACAACAAGGTGGTTATGCGCCTAAGCCACAAGCCGCTCCTGCGCCAGCTTATCAAGCGCCAGCAGCACCAGCACAGCGTC
CAGCACCGCAGCCACAACAGAATTTTACGCCAGATTTGGATGATGGCTGGGATGACGATATTCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

65.143

74.153

0.483
  ssb Glaesserella parasuis strain SC1401

45.726

99.153

0.453
  ssb Neisseria meningitidis MC58

39.485

98.729

0.39