Detailed information    

insolico Bioinformatically predicted

Overview

Name   ideA   Type   Regulator
Locus tag   MZ018_RS20435 Genome accession   NZ_CP096163
Coordinates   4607081..4607794 (+) Length   237 a.a.
NCBI ID   WP_232015275.1    Uniprot ID   -
Organism   Shewanella sp. JNE10-2     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 4603020..4611657 4607081..4607794 within 0
IS/Tn 4605789..4607078 4607081..4607794 flank 3


Gene organization within MGE regions


Location: 4603020..4611657
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MZ018_RS20410 (MZ018_20410) - 4603020..4603622 (+) 603 WP_048608523.1 hypothetical protein -
  MZ018_RS20415 (MZ018_20415) cadR 4603852..4604259 (-) 408 WP_048608525.1 Cd(II)/Pb(II)-responsive transcriptional regulator -
  MZ018_RS20420 (MZ018_20420) - 4604355..4605251 (+) 897 WP_048608527.1 cation transporter -
  MZ018_RS20425 (MZ018_20425) lspA 4605261..4605767 (+) 507 WP_007146113.1 signal peptidase II -
  MZ018_RS20430 (MZ018_20430) - 4605789..4607078 (+) 1290 WP_248084768.1 ISL3 family transposase -
  MZ018_RS20435 (MZ018_20435) ideA 4607081..4607794 (+) 714 WP_232015275.1 endonuclease Regulator
  MZ018_RS20440 (MZ018_20440) - 4608203..4610242 (-) 2040 WP_004249372.1 ATP-binding protein -
  MZ018_RS20445 (MZ018_20445) - 4610239..4611657 (-) 1419 WP_004249371.1 SIR2 family protein -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27405.53 Da        Isoelectric Point: 6.9188

>NTDB_id=680160 MZ018_RS20435 WP_232015275.1 4607081..4607794(+) (ideA) [Shewanella sp. JNE10-2]
MVSGWWGEGAPSTIKSVYPFFIALFAIPAIAEHPTSFSQAKRFAREIYQDNQSTFYCGCSYSNDGAIDAASCGYEPRKQP
KRGERLEWEHVVSAWEIGHQRQCWQNGGRRNCEKNDPEFSKMVSDLHNLVPSVGELNGDRSNFRFGMIPNEPRSYGQCDF
EVDFKDRRAEPPANRQGDIARIYFYMRDQYGLRLSRQQTQLFEAWSRMDPVDEWEKVRDFKIKTIQGNSNCHVSNSC

Nucleotide


Download         Length: 714 bp        

>NTDB_id=680160 MZ018_RS20435 WP_232015275.1 4607081..4607794(+) (ideA) [Shewanella sp. JNE10-2]
GTGGTATCAGGTTGGTGGGGTGAAGGTGCCCCATCAACCATTAAATCCGTATACCCTTTCTTTATAGCGTTATTCGCTAT
ACCTGCAATTGCAGAACACCCCACATCGTTCAGTCAGGCAAAACGATTTGCCCGAGAAATTTACCAAGACAACCAGAGTA
CGTTTTACTGTGGATGTAGCTATAGCAATGATGGTGCGATTGATGCTGCATCTTGCGGATATGAACCAAGAAAGCAACCG
AAACGAGGTGAACGCTTAGAGTGGGAACATGTAGTCTCAGCTTGGGAAATTGGCCATCAACGCCAATGCTGGCAAAATGG
TGGTCGTCGGAACTGCGAAAAGAATGATCCTGAGTTTTCTAAAATGGTTTCGGATCTCCATAACCTCGTACCATCTGTAG
GAGAGCTCAATGGGGATAGGTCAAATTTTCGATTTGGCATGATTCCGAATGAACCAAGATCCTATGGTCAATGTGATTTC
GAAGTTGATTTCAAAGACCGTCGAGCAGAACCACCAGCTAACCGTCAGGGTGATATTGCTAGAATTTATTTCTACATGCG
AGATCAATACGGCCTAAGACTCAGTAGGCAACAAACTCAGCTATTTGAAGCTTGGTCAAGAATGGACCCTGTTGACGAAT
GGGAAAAAGTGCGTGATTTTAAGATTAAAACTATTCAAGGTAACTCTAACTGCCATGTGTCAAATAGCTGTTAA

Domains

Predicted by InterproScan.

Endonuclease I (Endonuclease_1)

(63-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ideA Vibrio cholerae O1 str. 2010EL-1786

92.76

93.249

0.865
  dns Vibrio parahaemolyticus RIMD 2210633

51.948

97.468

0.506
  dns Aliivibrio fischeri ES114

52.423

95.781

0.502
  dns Vibrio cholerae strain A1552

50.661

95.781

0.485